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Table 1 Expression QTL master regulators identified in longissimus dorsi muscle. The SNP location (BTA: bp), SNP name, cluster number from Fig. 1, minor allele frequency, number of eQTLs associated with each master regulator, the proportion of DEG eQTLs, and the harboring or closest gene are shown for each eQTL master regulator

From: Identification of eQTLs and sQTLs associated with meat quality in beef

SNP locationSNP nameClusteraMAF (%)Number% DEGHarboring gene or closest genes b
of eQTLseQTLs
1: 119,758,395rs37834363014620.0TM4SF1
2: 11,594,176rs20822743623267.7ZNF804A
2: 25,653,736rs211476449333613.9GAD1
3: 102,943,677rs13578683442320.0KDM4A
5: 27,001,953rs441241989582718.5CSAD
5: 27,834,250rs110130901582524.0KRT7
5: 105,380,442rs2076490226247669.7NTF3 - KCNA5
7: 92,439,344rs11061895772348.8POLR3G - GPR98
8: 95,625,807ARS_BFGL_N-GS_65636831118.1ENSBTAG00000047350 - OR13F1
8: 104,345,143rs37870694782229.1ALAD
10: 8,457,276Bovine-HD10000028019302774.1PDE8B
11: 46,753,639rs2112184941083713.5PSD4
11: 46,785,388rs2094482261083713.55S_rRNA - PAX8
13: 54,009,694rs135144232114248.3ENSBTAG00000011638
14: 74,732,269rs208451702123248.3RUNX1T1
15: 79,202,054rs4178145013372035.0OR4X1 - OR4S1
15: 79,564,333rs1096301111324362.8ENSBTAG00000035487
16: 62,544,863rs456174577142360.0TOR1AIP1
17: 30,508,078BTB_0067623615413423.5INTU - FAT4
18: 56,858,212rs418913741652020.0C18H19ORF41 - MYH14
18: 57,361,426rs3834455691644117.1KLK4
18: 61,257,126No SNP name17491332.3ENSBTAG00000000336 - ENSBTAG00000046961
19: 42,754,262rs377935001182340.0TTC25
22: 16,367,834rs11028978219112450.0ENSBTAG00000030533 - ZNF445
26: 12,930,282rs420850622042326.1PCGF5
27: 31,921,721rs136162903213250.0KCNU1
28: 4,877,558rs207999887225345.9SNORA25 - SIPA1L2
  1. aCluster number used in Fig. 1
  2. bBolded genes were selected as master regulators when the associated SNP was intergenic; underlined gene names were identified as expressed in skeletal muscle in the present analysis.