Table 2 Number and type of multigenic effects identified by the eQTL and sQTL analysis performed in longissimus dorsi muscle
From: Identification of eQTLs and sQTLs associated with meat quality in beef
eQTL analysis | sQTL analysis | ||||
|---|---|---|---|---|---|
Gene | N | eQTL Type | Gene | N | sQTL Type |
SLC43A1 | 126 | Trans | TTN | 324 | DEG Trans |
LOC100848703 | 64 | Trans | TXN2 | 99 | Trans |
ULK2 | 43 | Trans | NEB | 63 | DEG Trans |
MYL1 | 40 | Trans | TCEB2 | 43 | Trans |
ENO3 | 36 | Trans | LOC100851645 | 36 | DEG Trans |
PHF14 | 36 | Trans | CREB5 | 33 | DEG Trans |
PKM | 32 | Trans | USF2 | 33 | DEG Trans |
ZBTB12 | 31 | Trans | MYH7 | 28 | Trans |
PGAM2 | 30 | Trans | PON3 | 26 | Trans |
ACTA1 | 28 | Trans | MYOM3 | 26 | Trans |
SNX19 | 25 | Trans | RSPO2 | 25 | Trans |
LDHA | 25 | Trans | METTL22 | 25 | Trans |
RPL5 | 23 | Trans | MAP 3 K14 | 25 | Trans |
ALDH4A1 | 23 | DEG Trans | UBR3 | 25 | Trans |
PLSCR3 | 22 | Trans | PAPD4 | 25 | Trans |
CHURC1 | 22 | Trans | BAZ1A | 24 | Trans |
TNNI2 | 22 | Trans | ITPR1 | 23 | Trans |
GPD1 | 21 | Trans | MYH1 | 23 | Trans |
TMTC2 | 21 | Trans | SVIL | 22 | Trans |
UCK2 | 21 | DEG Trans | ZDHHC4 | 22 | Trans |
LRRC42 | 20 | Trans | FILIP1L | 22 | DEG Trans |
HSPG2 | 21 | Trans | |||
UBR4 | 21 | Trans | |||
KTN1–2 | 21 | Trans | |||
DST | 21 | DEG Trans | |||
MYBPC1 | 20 | Trans | |||