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Table 1 Next generation sequencing statistical summary of sequenced and assembled results

From: Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

 

0 h

1 h

6 h

12 h

48 h

Total Reads

35,663,873

32,830,183

35,632,937

32,241,116

33,976,283

Mapped Reads

21,497,466

20,272,643

21,954,725

19,121,890

19,998,709

Mapped Ratio

60.26%

61.79%

61.62%

59.33%

58.87%

Nt

10,699,162,000

9,849,054,900

10,689,881,200

9,672,334,900

10,192,884,900

GC (%)

45.53

46.50

46.17

45.29

45.07

Q20 (%)

96.72

96.63

96.77

96.75

96.77

Q30 (%)

92.03

91.66

92.08

91.91

91.96

N Percentage

00.00

00.00

00.00

00.00

00.00

  1. Note: Nt, total number of clean nucleotides; The GC percentage is the proportion of guanidine and cytosine nucleotides among total nucleotides; The Q20 and Q30 percentage is the proportion of nucleotides with a quality value >20 and 30, respectively; The N percentage is the proportion of unknown nucleotides in clean reads