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Table 1 Next generation sequencing statistical summary of sequenced and assembled results

From: Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

  0 h 1 h 6 h 12 h 48 h
Total Reads 35,663,873 32,830,183 35,632,937 32,241,116 33,976,283
Mapped Reads 21,497,466 20,272,643 21,954,725 19,121,890 19,998,709
Mapped Ratio 60.26% 61.79% 61.62% 59.33% 58.87%
Nt 10,699,162,000 9,849,054,900 10,689,881,200 9,672,334,900 10,192,884,900
GC (%) 45.53 46.50 46.17 45.29 45.07
Q20 (%) 96.72 96.63 96.77 96.75 96.77
Q30 (%) 92.03 91.66 92.08 91.91 91.96
N Percentage 00.00 00.00 00.00 00.00 00.00
  1. Note: Nt, total number of clean nucleotides; The GC percentage is the proportion of guanidine and cytosine nucleotides among total nucleotides; The Q20 and Q30 percentage is the proportion of nucleotides with a quality value >20 and 30, respectively; The N percentage is the proportion of unknown nucleotides in clean reads