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Table 4 Salt stress defence mechanism related genes, Genes involved in physiological processes related to response to salt stress and highest significantly expressed genes that were significantly up and down regulated under different durations (1, 6, 12, 48 hours) of salt stress (200 mM NaCl) as compared to control

From: Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

Library

Unigene ID

Fold change

Nr. annotation

Unigene ID

Fold change

Nr. annotation

 

Up-regulated

Down-regulated

C1 vs S1

g11357

1.1

SBP-domain

-

-

-

g15171

1.3

Hsp70

g16391

1.1

plant invertase/ pectin (methyl-esterase inhibitor)

g7424

1.4

Uncharacterized protein family

C4 vs S4

Salt stress defence mechanism related genes

g1120

 

GID1- like gibberellin receptor

g6088

1.1

Cinnamoyl-Co-A reductase-1 like

g802

 

GID1- like gibberellin receptor

Genes involved in physiological processes related to response to salt stress

g243

1.8

ABA-insensitive like protein (bZIP-TF)

g1047

1.1

Plastid glutamine synthase

g3644

1.9

ABA-insensitive like protein (bZIP-TF)

g10527

2.0

Cellulose synthase A-catalytic [UDP-forming]

g7343

3.6

EID-like F-box protein-3

g11093

1.9

Cellulose synthase A-catalytic [UDP-forming]

g7826

1.6

WCOR-413-like cold accumulation protein

g11199

2.0

Cellulose synthase A-catalytic [UDP-forming]

g9718

2.1

Putative low temperature and salt responsive protein isoform-1

g11449

1.9

Cellulose synthase A-catalytic [UDP-forming]

g146

1.4

Dicarboxylate transporter-1, chloroplast

g14716

2.1

Indole-3 acetic acid amino synthase [GH3]

g15096

1.1

Indole-3 acetic acid amino synthase [GH3]

g15564

1.1

Indole-3 acetic acid amino synthase [GH3]

g1634

1.3

Tubulin alpha-2 chain-like

g16418

1.6

Dicarboxylate transporter-1, chloroplast

g16788

1.4

Dicarboxylate transporter-1, chloroplast

g1835

1.1

Protein WALLS ARE THIN-1 like

g6333

2.3

Aquaporin protein-12

g6414

2.0

Aquaporin protein-12

Highest significantly expressed genes (more than four folds higher than control)

g128

4.4

Protein TRANSPARENT TESTA-12 (MaTE protein detoxification)

g12981

4.5

Nitrate reductase [NADH]

g16087

4.6

Malate synthase, glyoxysomal [PRUPE]

g13113

4.5

Nitrate reductase [NADH]

g16131

4.3

Malate synthase, glyoxysomal [PRUPE

   

g2278

5.2

Malate synthase, glyoxysomal [PRUPE]

g4002

4.3

SNF-1 related protein kinase

g55

4.4

Malate synthase, glyoxysomal [PRUPE]

g5655

4.6

Malate synthase, glyoxysomal [PRUPE]

g9231

4.2

Dehydrin

g9447

4.1

Dehydrin

C5 vs S5

Salt stress defence mechanism related genes

g1120

 

GID1- like gibberellin receptor

-

-

-

g802

 

GID1- like gibberellin receptor

Genes involved in physiological processes related to response to salt stress

g13368

1.2

BEL-like homes domain protein-1 (BLH-1)

g10527

1.8

Cellulose synthase A-catalytic [UDP-forming]

g13566

1.0

BEL-like homes domain protein-1 (BLH-1)

g11199

2.0

Cellulose synthase A-catalytic [UDP-forming]

g243

2.9

ABA-insinsative like protein (bZIP1-TF)

g11449

2.0

Cellulose synthase A-catalytic [UDP-forming]

g3644

3.3

ABA-insinsative like protein (bZIP1-TF)

g1634

1.3

Tubulin alpha-2 chain-like

g7343

3.9

EID-like F-box protein-3

g2681

1.1

Enoyl-[acyl-carrier-rotein] reductase [NADH], chloroplast-like

g11093

2.0

Cellulose synthase A-catalytic [UDP-forming]

Highest significantly expressed genes (more than four folds higher than control)

g3153

 

AphC/TSA family

g11772

4.2

Elongation Factor [TSF]

g3480

 

AphC/TSA family

g5817

4.5

ACT-domain containing protein [ACR11]

g3682

 

Intercellular signal transduction

g8657

4.2

Proline rich protein [DC2]

g9421

5.5

Protein like isoform (plant invvertase/ pectin methylesterase inhibitor)

D6 vs S6

Salt stress defence mechanism related genes

g1120

 

GID1- like gibberellin receptor

g5647

1.0

Alpha/beta hydrolase (carboxylesterase)

g802

 

GID1- like gibberellin receptor

g5851

1.2

Cinnamoyl-Co-A reductase-like

Genes involved in physiological processes related to response to salt stress

g15315

 

Cysteine rich receptor-like protein kinase-2

g1047

1.8

Plastid glutamine synthase

g243

 

ABA-insensitive like protein (bZIP1-TF)

g11093

1.4

Cellulose synthase A-catalytic [UDP-forming]

g3644

 

ABA-insensitive like protein (bZIP1-TF)

g11199

1.5

Cellulose synthase A-catalytic [UDP-forming]

g7343

 

EID-like F-box protein-3

g11449

1.5

Cellulose synthase A-catalytic [UDP-forming]

g9718

 

Putative low temperature and salt responsive protein isoform-1

g146

1.5

Dicarboxylate transporter-1, chloroplast

g16196

1.5

Dicarboxylate transporter-1, chloroplast

g16418

1.7

Dicarboxylate transporter-1, chloroplast

g16788

1.3

Dicarboxylate transporter-1, chloroplast

g2795

1.0

Serine-glyoxylate aminotransferase

g3130

1.1

Serine-glyoxylate aminotransferase

g4724

1.1

Uncharacterized protein sequence

g7120

1.1

Serine-glyoxylate aminotransferase

g7168

1.9

Chlorophyll a-b binding protein CP2410-A

g7762

1.2

Serine-glyoxylate aminotransferase

Highest significantly expressed genes (more than four folds higher than control)

g10431

 

Energy production and conservation

g4007

5.4

Magnisium-chelatase [ChlH], Chloroplast

g16087

 

Energy production and conservation

g4581

4.6

Alpha expansin

g16288

 

Energy production and conservation

g2278

 

Energy production and conservation

g2618

 

Signal transduction mechanisms

g2863

 

Signal transduction mechanisms

g675

 

reverse transcription

g7343

 

EID-like F-box protein-3

g9017

 

Energy production and conservation