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Table 4 Salt stress defence mechanism related genes, Genes involved in physiological processes related to response to salt stress and highest significantly expressed genes that were significantly up and down regulated under different durations (1, 6, 12, 48 hours) of salt stress (200 mM NaCl) as compared to control

From: Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

Library Unigene ID Fold change Nr. annotation Unigene ID Fold change Nr. annotation
  Up-regulated Down-regulated
C1 vs S1 g11357 1.1 SBP-domain - - -
g15171 1.3 Hsp70
g16391 1.1 plant invertase/ pectin (methyl-esterase inhibitor)
g7424 1.4 Uncharacterized protein family
C4 vs S4 Salt stress defence mechanism related genes
g1120   GID1- like gibberellin receptor g6088 1.1 Cinnamoyl-Co-A reductase-1 like
g802   GID1- like gibberellin receptor
Genes involved in physiological processes related to response to salt stress
g243 1.8 ABA-insensitive like protein (bZIP-TF) g1047 1.1 Plastid glutamine synthase
g3644 1.9 ABA-insensitive like protein (bZIP-TF) g10527 2.0 Cellulose synthase A-catalytic [UDP-forming]
g7343 3.6 EID-like F-box protein-3 g11093 1.9 Cellulose synthase A-catalytic [UDP-forming]
g7826 1.6 WCOR-413-like cold accumulation protein g11199 2.0 Cellulose synthase A-catalytic [UDP-forming]
g9718 2.1 Putative low temperature and salt responsive protein isoform-1 g11449 1.9 Cellulose synthase A-catalytic [UDP-forming]
g146 1.4 Dicarboxylate transporter-1, chloroplast
g14716 2.1 Indole-3 acetic acid amino synthase [GH3]
g15096 1.1 Indole-3 acetic acid amino synthase [GH3]
g15564 1.1 Indole-3 acetic acid amino synthase [GH3]
g1634 1.3 Tubulin alpha-2 chain-like
g16418 1.6 Dicarboxylate transporter-1, chloroplast
g16788 1.4 Dicarboxylate transporter-1, chloroplast
g1835 1.1 Protein WALLS ARE THIN-1 like
g6333 2.3 Aquaporin protein-12
g6414 2.0 Aquaporin protein-12
Highest significantly expressed genes (more than four folds higher than control)
g128 4.4 Protein TRANSPARENT TESTA-12 (MaTE protein detoxification) g12981 4.5 Nitrate reductase [NADH]
g16087 4.6 Malate synthase, glyoxysomal [PRUPE] g13113 4.5 Nitrate reductase [NADH]
g16131 4.3 Malate synthase, glyoxysomal [PRUPE    
g2278 5.2 Malate synthase, glyoxysomal [PRUPE]
g4002 4.3 SNF-1 related protein kinase
g55 4.4 Malate synthase, glyoxysomal [PRUPE]
g5655 4.6 Malate synthase, glyoxysomal [PRUPE]
g9231 4.2 Dehydrin
g9447 4.1 Dehydrin
C5 vs S5 Salt stress defence mechanism related genes
g1120   GID1- like gibberellin receptor - - -
g802   GID1- like gibberellin receptor
Genes involved in physiological processes related to response to salt stress
g13368 1.2 BEL-like homes domain protein-1 (BLH-1) g10527 1.8 Cellulose synthase A-catalytic [UDP-forming]
g13566 1.0 BEL-like homes domain protein-1 (BLH-1) g11199 2.0 Cellulose synthase A-catalytic [UDP-forming]
g243 2.9 ABA-insinsative like protein (bZIP1-TF) g11449 2.0 Cellulose synthase A-catalytic [UDP-forming]
g3644 3.3 ABA-insinsative like protein (bZIP1-TF) g1634 1.3 Tubulin alpha-2 chain-like
g7343 3.9 EID-like F-box protein-3 g2681 1.1 Enoyl-[acyl-carrier-rotein] reductase [NADH], chloroplast-like
g11093 2.0 Cellulose synthase A-catalytic [UDP-forming]
Highest significantly expressed genes (more than four folds higher than control)
g3153   AphC/TSA family g11772 4.2 Elongation Factor [TSF]
g3480   AphC/TSA family g5817 4.5 ACT-domain containing protein [ACR11]
g3682   Intercellular signal transduction g8657 4.2 Proline rich protein [DC2]
g9421 5.5 Protein like isoform (plant invvertase/ pectin methylesterase inhibitor)
D6 vs S6 Salt stress defence mechanism related genes
g1120   GID1- like gibberellin receptor g5647 1.0 Alpha/beta hydrolase (carboxylesterase)
g802   GID1- like gibberellin receptor g5851 1.2 Cinnamoyl-Co-A reductase-like
Genes involved in physiological processes related to response to salt stress
g15315   Cysteine rich receptor-like protein kinase-2 g1047 1.8 Plastid glutamine synthase
g243   ABA-insensitive like protein (bZIP1-TF) g11093 1.4 Cellulose synthase A-catalytic [UDP-forming]
g3644   ABA-insensitive like protein (bZIP1-TF) g11199 1.5 Cellulose synthase A-catalytic [UDP-forming]
g7343   EID-like F-box protein-3 g11449 1.5 Cellulose synthase A-catalytic [UDP-forming]
g9718   Putative low temperature and salt responsive protein isoform-1 g146 1.5 Dicarboxylate transporter-1, chloroplast
g16196 1.5 Dicarboxylate transporter-1, chloroplast
g16418 1.7 Dicarboxylate transporter-1, chloroplast
g16788 1.3 Dicarboxylate transporter-1, chloroplast
g2795 1.0 Serine-glyoxylate aminotransferase
g3130 1.1 Serine-glyoxylate aminotransferase
g4724 1.1 Uncharacterized protein sequence
g7120 1.1 Serine-glyoxylate aminotransferase
g7168 1.9 Chlorophyll a-b binding protein CP2410-A
g7762 1.2 Serine-glyoxylate aminotransferase
Highest significantly expressed genes (more than four folds higher than control)
g10431   Energy production and conservation g4007 5.4 Magnisium-chelatase [ChlH], Chloroplast
g16087   Energy production and conservation g4581 4.6 Alpha expansin
g16288   Energy production and conservation
g2278   Energy production and conservation
g2618   Signal transduction mechanisms
g2863   Signal transduction mechanisms
g675   reverse transcription
g7343   EID-like F-box protein-3
g9017   Energy production and conservation