Table 2 Number of representative contigs selected by each algorithm from each transcriptome when run with default parameters
From: Compacta: a fast contig clustering tool for de novo assembled transcriptomes
| Â | Arabidopsis | Mouse | Mango | ||
|---|---|---|---|---|---|
Real | Simulated | Real | Simulated | Real | |
Compacta | 33,542 | 21,518 | 223,169 | 19,844 | 28,356 |
Corset | 27,080 | 26,414 | 95,079 | 23,716 | 38,448 |
Grouper | 27,949 | 23,026 | 57,501 | 18,652 | 38,063 |