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Table 4 Case classification for contig pairs after clustering. a, b, c and d are frequencies resulting from a clustering experiment

From: Compacta: a fast contig clustering tool for de novo assembled transcriptomes

 

Same locus?

Yes

No

Total

Clustered?

Yes

a (true positive)

b (false positive)

a + b (positives)

No

c (false negative)

d (true negative)

c + d (negatives)

Total

a + c (single locus)

b + d (different loci)

a + b + c + d