Table 1 Overview of small RNA sequencing in the mock-infected and DHAV-3-infected libraries
From: Immune-related miRNA-mRNA regulation network in the livers of DHAV-3-infected ducklings
Type | Mock-infected duck liver | DHAV-3-infected duck liver | ||||||
|---|---|---|---|---|---|---|---|---|
Unique | Percent | Total | Percent | Unique | Percent | Total | Percent | |
Raw reads | Â | Â | 11,826,502 | Â | Â | Â | 14,689,775 | Â |
Clean reads | 139,965 | Â | 9,172,408 | Â | 240,697 | Â | 9,531,577 | Â |
rRNA | 17,855 | 12.76 | 275,818 | 3.01 | 35,351 | 14.69 | 2,301,404 | 24.15 |
snRNA | 462 | 0.33 | 2910 | 0.03 | 1291 | 0.54 | 22,661 | 0.24 |
snoRNA | 587 | 0.42 | 77,678 | 0.85 | 670 | 0.28 | 11,815 | 0.12 |
tRNA | 5061 | 3.62 | 417,238 | 4.55 | 10,225 | 4.25 | 1,103,800 | 11.58 |
exon_sense | 15,717 | 11.23 | 43,102 | 0.47 | 29,505 | 12.26 | 95,225 | 1.00 |
exon_antisense | 408 | 0.29 | 1542 | 0.02 | 310 | 0.13 | 1949 | 0.02 |
intron_sense | 5040 | 3.60 | 35,317 | 0.39 | 4684 | 1.95 | 35,333 | 0.37 |
intron_antisense | 6238 | 4.46 | 60,363 | 0.66 | 14,173 | 5.89 | 1,323,996 | 13.89 |
repeat | 444 | 0.32 | 84,834 | 0.92 | 487 | 0.20 | 282,012 | 2.96 |
miRNA | 21,271 | 15.20 | 7,281,344 | 79.39 | 9365 | 3.89 | 1,050,011 | 11.02 |
unannotated | 66,350 | 47.40 | 878,547 | 9.58 | 134,035 | 55.69 | 3,289,546 | 34.51 |