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Fig. 2 | BMC Genomics

Fig. 2

From: Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

Fig. 2

Millefy visualization of read coverage at the Sox17 locus. Millefy was applied to RamDA-seq data from mouse embryonic stem cells (mESCs) upon induction of cell differentiation to primitive endoderm cells. The top heat map shows single-cell read coverage. Color keys on the left side represent cells from different time points. The middle tracks show the averaged read coverage at different time points, the bulk RNA sequencing read coverage, and enhancer annotations. The bottom track shows the GENCODE reference gene annotation. Cells were reordered within a user-specified groups and b across all cells

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BMC Genomics

ISSN: 1471-2164

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