Transcriptome profiles of Quercus rubra responding to increased O3 stress

BMC Genomics

Table 2 DEGs involved in plant-pathogen interaction pathway

Ozone treatments with respective regulation pattern	Putative transcripts id	ME^b	Annotation	\|LogFC\|^a	KEGG entry	Length (bp)
125 ppb at 14 day-down	comp19736_c0_seq3	ME0	Disease resistance RPM1	6.26	K13457	682
125 ppb at 28 day-up	comp21410_c0_seq1	ME1	Heat shock cognate 80	1.43	K04079	1281
	comp31660_c0_seq2	ME1	Enhanced disease susceptibility 1	2.43	K18875	2272
	comp31660_c0_seq1	ME1	Enhanced disease susceptibility 1-like	2.55	K18875	946
	comp26463_c0_seq2	ME1	Calcium-dependent kinase 10	2.46	K13412	2130
	comp28434_c0_seq1	ME53	Calcium-binding CML23	2.03	K13448	661
	comp18561_c0_seq1	ME1	Lipase_3 domain-containing	3.52	K18875	367
	comp94592_c0_seq1	ME53	Calcium-binding CML45	3.27	K13448	786
225 ppb at 14 day-up	comp31273_c0_seq7	ME51	Disease resistance At1g12280 (LRR and NB-ARC domains)	3.61	K13459	845
	comp18481_c0_seq1	ME53	Calcium-dependent kinase	5.63	K13412	596
	comp9320_c0_seq1	ME0	26-like	3.56	K13412	833
	comp21573_c0_seq1	ME0	Calcium-dependent kinase 26-like	1.43	K04079	888
	comp31660_c0_seq5	ME5	Heat shock cognate 80-like	1.49	K18875	1932
	comp23142_c0_seq3	ME31	Enhanced disease susceptibility	1.25	K20536	1335
	comp31028_c0_seq1	ME5	Mitogen-activated kinase 3 Respiratory burst oxidase homolog A	2.04	K13447	3505

^a Variation in logFC indicates the amount of log-based changes of gene expression level in the treatment compared with respective control sample
^b ME refers to the module number from the gene coexpression network analysis

ISSN: 1471-2164