Table 2 List of genes involved in phagosome pathway of pde6c mutant zebrafish (p-value = 5.68e-04; FDR = 2.6e-02)
Ref mRNA | Gene Symbol | Gene Name | logFC | p-value |
|---|---|---|---|---|
NM_001033721 | itgav | integrin, alpha V | −11.90966981 | 8.44E-06 |
NM_153659 | sec61a1 | Sec61 translocon alpha 1 subunit | −4.751020073 | 2.47E-07 |
NM_173254 | atp6v1e1b | ATPase, H+ transporting, lysosomal, V1 subunit E1b | −5.280581114 | 1.80E-06 |
NM_173255 | atp6v0ca | ATPase, H+ transporting, lysosomal, V0 subunit ca | −13.63501996 | 1.50E-09 |
NM_199561 | atp6v0b | ATPase, H+ transporting, lysosomal V0 subunit b | −12.22047943 | 1.52E-06 |
NM_199620 | atp6v0d1 | ATPase, H+ transporting, lysosomal V0 subunit d1 | −12.91329746 | 7.59E-08 |
NM_199713 | calr | calreticulin | −11.48042737 | 4.49E-05 |
NM_199934 | atp6v1g1 | ATPase, H+ transporting, lysosomal, V1 subunit G1 | −12.06864677 | 3.55E-06 |
NM_201485 | rab5aa | RAB5A, member RAS oncogene family, a | −12.76579558 | 1.10E-07 |
NM_201322 | atp6v1c1a | ATPase, H+ transporting, lysosomal, V1 subunit C1a | −12.8196416 | 7.94E-08 |
NM_194388 | tuba1b | tubulin, alpha 1b | −11.23913699 | 8.52E-05 |
NM_198818 | tubb5 | tubulin, beta 5 | −4.073625492 | 4.71E-05 |
NM_200414 | cybb | cytochrome b-245, beta polypeptide (chronic granulomatous disease) | 5.802066863 | 3.87E-12 |
NM_201135 | atp6v1aa | ATPase, H+ transporting, lysosomal, V1 subunit Aa | −13.31681197 | 6.58E-09 |
NM_213030 | tuba2 | tubulin, alpha 2 | −12.88637707 | 8.98E-08 |
NM_213448 | canx | calnexin | −12.86210644 | 6.21E-08 |
NM_001002526 | atp6v1f | ATPase, H+ transporting, lysosomal, V1 subunit F | −11.68530135 | 1.63E-05 |
NM_001005772 | atp6v1c1b | ATPase, H+ transporting, lysosomal, V1 subunit C1b | −11.19719131 | 0.000111091 |
NM_001020666 | atp6v0a1b | ATPase, H+ transporting, lysosomal V0 subunit a1b | −13.28947797 | 7.71E-09 |
NM_001172635 | atpv0e2 | ATPase, H+ transporting V0 subunit e2 | −12.58243475 | 3.26E-07 |
NM_001082836 | itgb5 | integrin, beta 5 | −11.19217538 | 0.000111091 |
NM_001105126 | tuba1c | tubulin, alpha 1c | −14.61096727 | 4.55E-12 |
NM_131031 | actb1 | actin, beta 1 | −5.667990423 | 5.34E-09 |
NM_181601 | actb2 | actin, beta 2 | −4.641227854 | 5.35E-09 |
NM_001037410 | tubb2b | tubulin, beta 2b | −5.70469418 | 6.49E-10 |