Organism | Strain | PCR Assay | Amplicon Length (bps) | CIGAR* | Insertions | Deletions | SC left | SC right | Alignment Expected? | Expected PCR result | Observed PCR Result |
---|---|---|---|---|---|---|---|---|---|---|---|
B. anthracis | 708 | PRC_01 | 110 | 70M3D40M | 0 | 3 | 0 | 0 | Y | + | + |
B. anthracis | 708 | PRC_04 | 182 | 155M4D27M | 0 | 4 | 0 | 0 | Y | + | + |
B. anthracis | 708 | PRC_07 | 96 | 96 M | 0 | 0 | 0 | 0 | Y | + | + |
Y. pestis | 113 | PRC_09 | 68 | 68 M | 0 | 0 | 0 | 0 | Y | + | + |
Y. pestis | 114 | PRC_09 | 68 | 68 M | 0 | 0 | 0 | 0 | Y | + | + |
Y. pestis | 113 | PRC_11 | 79 | 79 M | 0 | 0 | 0 | 0 | Y | + | + |
Y. pestis | 114 | PRC_14 | 103 | 103 M | 0 | 0 | 0 | 0 | Y | + | – |
Y. pestis | 113 | PRC_15 | 67 | 67 M | 0 | 0 | 0 | 0 | Y | + | + |
Y. pestis | 114 | PRC_15 | 67 | 67 M | 0 | 0 | 0 | 0 | Y | + | + |
F. tularensis | 239 | PRC_23 | 135 | 135 M | 0 | 0 | 0 | 0 | Y | + | + |
F. tularensis | 240 | PRC_23 | 135 | 135 M | 0 | 0 | 0 | 0 | Y | + | + |
F. tularensis | 241 | PRC_23 | 135 | 133M2S | 0 | 0 | 0 | 2 | Y | + | + |
F. tularensis | 239 | PRC_28 | 171 | 90M1D81M | 0 | 1 | 0 | 0 | Y | + | + |
F. tularensis | 239 | PRC_29 | 119 | 48S71M | 0 | 0 | 48 | 0 | N | – | – |
F. tularensis | 240 | PRC_29 | 119 | 119 M | 0 | 0 | 0 | 0 | Y | + | – |
F. tularensis | 241 | PRC_29 | 119 | 71M48S | 0 | 0 | 0 | 48 | N | – | – |
F. tularensis | 241 | PRC_30 | 126 | 126 M | 0 | 0 | 0 | 0 | Y | + | + |
B. mallei | 164 | PRC_49 | 100 | 100 M | 0 | 0 | 0 | 0 | Y | + | + |
B. pseudomallei | 197 | PRC_49 | 100 | no alignment** | – | + | |||||
B. pseudomallei | 197 | PRC_50 | 115 | 115 M | 0 | 0 | 0 | 0 | Y | + | + |
B. pseudomallei | 197 | PRC_65 | 67 | 67 M | 0 | 0 | 0 | 0 | Y | + | + |