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Fig. 1 | BMC Genomics

Fig. 1

From: Presence–absence polymorphisms of single-copy genes in the stony coral Acropora digitifera

Fig. 1

PAP in the Acropora digitifera genome. (a) An example of a PAP region lacking coverage. The genomic location of a CDS (LOC107329567) is shown with a gray arrow on the scaffold (NW_015442398.1). The read coverage (0 to 50) across the scaffold is shown in gray for a control and three samples. Dotted lines indicate the approximate start and end positions of the area with no read coverage. (b) Boundaries of absent alleles in A. digitifera and A. tenuis. The sequence from the scaffold (NW_015442476.1) was used as an A. digitifera present allele. The genomic locations of two genes are shown with light gray arrows on the line representing the scaffold sequence. Existing genomic regions are shown in dark gray in both present and absent alleles of A. digitifera and A. tenuis. The A. digitifera specific deletion is indicated by dashed lines. The sequence predicted from the length of a PCR product for the A. tenuis present allele is surrounded by a dashed line, insertions specific to absent alleles are shown by light gray boxes. The locations of the 5′ junction and 3′ junction are indicated by black arrows

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