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Table 2 R packages used in the GenomeQC web-application

From: GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations

R packageShort Description
Shiny version 1.5.9Package to build interactive web applications with R
Tools [17]Package for file utilities
Seqinr [18]Package for handling biological sequence data
Biostrings [19]Package for manipulating biological sequences
R.utils [20]Package for handling gunzipped files
Tidyverse [21]Package for formatting and plotting data
Gridextra [22], grid [22], cowplot [23]Package provides graphical layout capabilities to R
Reshape [24]Package for formatting and aggregating the data
shinyWidgets [25]Package for customizing input widgets in R shiny applications
shinyBS [26]Package for adding action and toggle buttons and popover to input or output
Promise, future and multisession [27]Package that provides async programming in R to handle long-running operations that run in the background