Table 1 The synthetic datasets and the number of simulated sequence variations. The Average Sequence Identity (ASI) is estimated by the total mismatches divided by the number of nucleobases
From: GSAlign: an efficient sequence alignment tool for intra-species genomes
Dataset | Genome size | SNV | Small indel | large indel | ASI |
|---|---|---|---|---|---|
simHG-1X | 3,088,279,342 | 58,421,383 | 1,001,626 | 285,757 | 97.93% |
simHG-3X | 3,088,292,247 | 175,100,939 | 962,721 | 275,584 | 93.86% |
simHG-5X | 3,088,289,999 | 291,714,646 | 919,762 | 263,271 | 89.90% |
NA12878 | 6,070,700,436 | 3,088,156 | 531,315 | NA | 99.84% |