From: InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining
Features | ID. | Description of numerical features |
---|---|---|
Uniquely/Multiply mapped | 1 | Number of uniquely mapped reads |
2 | Number of multiply mapped reads | |
One end unmapped | 3 | Number of read pairs with one end unmapped |
Soft-clip read | 4 | Number of clipped read |
Mapped with error/error free | 5 | Number of mapped with error free |
6 | Number of mapped with error | |
ISPE of read pair | 7 | Number of concordant pair whose ISPE is normal |
8 | Number of discordant pair whose ISPE is abnormal | |
Mapping quality | 9 | Sum of mapped quality |
10 | Number of low mapped quality | |
11 | Number of middle mapped quality | |
12 | Number of high mapped quality | |
Read pair orientation | 13 | Both mapped on reverse strand |
14 | Both mapped on forward strand | |
15 | Both mapped on same strand |