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Table 2 KEGG pathways of differentially expressed genes by Picea abies infected by Chrysomyxa rhododendri

From: RNA-Seq and secondary metabolite analyses reveal a putative defence-transcriptome in Norway spruce (Picea abies) against needle bladder rust (Chrysomyxa rhododendri) infection

METABOLISM

4dpi

9dpi

21dpi

39dpi

 Carbohydrate metabolism

OVER

UNDER

OVER

UNDER

OVER

UNDER

OVER

UNDER

  00010 Glycolysis / Gluconeogenesis

 

1

 

1

5

5

13

11

  00020 Citrate cycle (TCA cycle)

    

4

2

4

3

  00030 Pentose phosphate pathway

 

1

1

1

2

3

5

7

  00040 Pentose and glucuronate interconversions

 

1

  

1

2

4

5

  00051 Fructose and mannose metabolism

 

1

 

1

3

2

6

4

  00052 Galactose metabolism

 

1

  

4

3

5

1

  00053 Ascorbate and aldarate metabolism

 

1

  

5

1

4

6

  00500 Starch and sucrose metabolism

1

1

  

8

7

11

4

  00520 Amino sugar and nucleotide sugar metabolism

 

1

  

6

4

9

4

  00620 Pyruvate metabolism

    

3

2

5

7

  00630 Glyoxylate and dicarboxylate metabolism

 

3

1

1

4

8

4

17

  00562 Inositol phosphate metabolism

   

2

3

1

4

3

 Energy metabolism

  00190 Oxidative phosphorylation

3

1

  

2

3

6

5

  00195 Photosynthesis

1

2

 

1

 

8

 

27

  00196 Photosynthesis - antenna proteins

1

    

2

 

7

  00710 Carbon fixation in photosynthetic organisms

 

1

 

1

3

9

4

17

  00910 Nitrogen metabolism

  

1

1

2

4

2

3

  00920 Sulfur metabolism

   

2

4

 

3

 

 Lipid metabolism

  00061 Fatty acid biosynthesis

    

2

1

1

3

  00071 Fatty acid degradation

2

   

4

2

6

5

  00073 Cutin, suberine and wax biosynthesis

 

1

 

1

 

3

 

2

  00561 Glycerolipid metabolism

    

4

2

5

1

  00564 Glycerophospholipid metabolism

 

1

 

1

6

2

3

 

  00565 Ether lipid metabolism

   

1

3

 

2

 

  00600 Sphingolipid metabolism

    

3

 

5

2

  00592 alpha-Linolenic acid metabolism

1

   

6

2

4

3

  01040 Biosynthesis of unsaturated fatty acids

2

1

  

2

 

4

2

 Nucleotide metabolism

  00230 Purine metabolism

   

1

3

3

5

4

  00240 Pyrimidine metabolism

    

2

1

4

1

 Amino acid metabolism

  00250 Alanine, aspartate and glutamate metabolism

 

1

  

3

2

4

4

  00260 Glycine, serine and threonine metabolism

 

2

  

1

2

6

6

  00270 Cysteine and methionine metabolism

1

  

1

7

3

9

4

  00280 Valine, leucine and isoleucine degradation

    

2

1

3

 

  00220 Arginine biosynthesis

    

1

1

1

4

  00330 Arginine and proline metabolism

    

6

1

5

3

  00350 Tyrosine metabolism

    

3

2

4

5

  00360 Phenylalanine metabolism

    

5

 

4

3

  00380 Tryptophan metabolism

    

4

2

4

2

  00400 Phenylalanine, tyrosine and tryptophan biosynthesis

 

1

  

2

2

2

3

 Metabolism of other amino acids

  00410 beta-Alanine metabolism

    

5

3

6

 

  00450 Selenocompound metabolism

   

1

3

 

3

1

  00460 Cyanoamino acid metabolism

  

1

 

3

1

2

3

  00480 Glutathione metabolism

 

1

 

1

6

3

4

6

 Metabolism of cofactors and vitamins

  00730 Thiamine metabolism

     

2

1

5

  00740 Riboflavin metabolism

    

1

1

1

3

  00790 Folate biosynthesis

   

1

3

3

1

1

  00670 One carbon pool by folate

     

3

 

3

  00860 Porphyrin and chlorophyll metabolism

1

  

2

 

5

2

13

  00130 Ubiquinone and other terpenoid-quinone biosynthesis

    

4

 

3

2

 Metabolism of terpenoids and polyketides

  00900 Terpenoid backbone biosynthesis

   

1

6

3

5

4

  00904 Diterpenoid biosynthesis

    

2

1

1

3

  00906 Carotenoid biosynthesis

 

2

  

1

3

1

7

 Biosynthesis of other secondary metabolites

  00940 Phenylpropanoid biosynthesis

1

   

9

 

8

4

  00941 Flavonoid biosynthesis

 

3

  

5

 

4

3

GENETIC INFORMATION PROCESSING

 Transcription

  03040 Spliceosome

2

1

  

1

1

5

4

 Translation

  03010 Ribosome

2

1

 

1

19

7

7

31

  00970 Aminoacyl-tRNA biosynthesis

 

1

   

3

1

7

  03013 RNA transport

      

4

5

  03015 mRNA surveillance pathway

1

    

1

3

3

 Folding, sorting and degradation

  03060 Protein export

 

1

  

3

1

4

4

  04141 Protein processing in endoplasmic reticulum

3

4

 

1

19

3

18

5

  04120 Ubiquitin mediated proteolysis

    

7

1

4

1

  03050 Proteasome

    

1

 

5

 

  03018 RNA degradation

    

4

2

4

3

ENVIRONMENTAL INFORMATION PROCESSING

 Signal transduction

  04016 MAPK signaling pathway - plant

 

3

  

11

1

11

1

  04070 Phosphatidylinositol signaling system

 

1

 

1

2

1

3

2

  04075 Plant hormone signal transduction

    

11

7

10

3

CELLULAR PROCESSES

 Transport and catabolism

  04144 Endocytosis

2

2

  

5

7

6

2

  04145 Phagosome

2

1

  

4

2

7

1

  04146 Peroxisome

1

1

  

5

1

7

5

ORGANISMAL SYSTEMS

 Environmental adaptation

  04712 Circadian rhythm - plant

 

3

  

2

1

1

 

  04626 Plant-pathogen interaction

 

4

  

9

2

11

6

  1. legend: Numbers refer to key enzymes represented by Picea abies KAAS assigned orthologous. For 39 dpi, only symptomatic needles were considered. To simplify the table, only those pathways with at least 3 key enzymes represented at one of the time points where considered (for full table see Additional file 5: Table S3)
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BMC Genomics

ISSN: 1471-2164

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