Skip to main content

Table 3 Number of genomes containing a hit in the SPI database for each serovar

From: Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

SEROVAR

S. 4, [5],12:i:-

S. Choleraesuis

S. Dublin

S. Enteritidis

S. Heidelberg

S. Newport

S. Napoli

S. Paratyphi A

S. Typhi

S. Typhimurium

SPI-1/C63PI

1

3

2

81

27

22

179

7

40

56

SPI-2

1

3

2

81

27

22

179

7

40

56

SPI-3

1

3

2

81

27

22

0

6

39

51

SPI-4

1

3

2

80

25

21

61

7

33

52

SPI-5

1

3

2

81

27

21

179

7

40

56

SPI-6

0

0

0

0

0

0

0

0

37

0

SPI-7

0

0

0

0

0

0

0

0

29

0

SPI-8

0

0

0

0

0

0

0

7

40

0

SPI-9

1

3

2

81

27

22

179

7

40

56

SPI-10

0

0

0

0

0

0

0

0

24

0

SPI-11

0

2

0

2

0

1

0

0

0

0

SPI-12

1

3

2

79

26

22

4

0

40

54

SPI-13

1

3

2

81

27

22

177

0

0

56

SPI-14

1

3

2

81

27

22

0

0

0

56

SPI-18

0

0

0

0

0

0

179

7

40

0

  1. For each of the investigated SPI sequences, the number of genomes showing a BLAST hit with > 80% identity, > 60% of query coverage and e-value < 0.01 for each serovar is reported. Bold numbers represent cases in which all-available genomes for the serovar have a hit for the corresponding SPI