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Table 9 Annotation of deleterious missense variants with pairwise FST of 1

From: Assessing breed integrity of Göttingen Minipigs

Chr

Pos [bp]

Pool 1

Pool 2

Ensembl ID

RS ID

SIFT

Gene name

3

1′741‘574

DA2

DA3

ENSSSCG00000007567

rs1108271931

0

CHST12

3

1′741‘574

DA2

NI

ENSSSCG00000007567

rs1108271931

0

CHST12

9

9′545‘629

DA3

NR

ENSSSCG00000014852

rs793754709

0

ARRB1

9

9′545‘629

NR

RE

ENSSSCG00000014852

rs793754709

0

ARRB1

10

2′699‘680

DA2

DA3

ENSSSCG00000042899

0.03

10

2′699‘680

DA2

NR

ENSSSCG00000042899

0.03

13

207′155‘372

DA2

NR

ENSSSCG00000025294

rs343158168

0.03

AIRE

14

132′394‘490

DA2

DA3

ENSSSCG00000046807

0.04

14

132′394‘490

DA2

NR

ENSSSCG00000046807

0.04

18

50′955‘382

DA3

NR

ENSSSCG00000039535

rs713007753

0.01

CAMK2B