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Fig. 7 | BMC Genomics

Fig. 7

From: A completeness-independent method for pre-selection of closely related genomes for species delineation in prokaryotes

Fig. 7

Sieving performance on real genomes. a for sensitivity. Black, 60,298 intraspecies pairs sieved by both FRAGTE and TETRA; gray, 1199 intraspecies pairs uniquely detected by FRAGTE. b for specificity. c for total number of sievied pairs. d for runtime. The runtime is the summed executive time including both fragmenting and determining phrases for all pairs by using serial execution (single thread, single process). Only a single compute node with two Intel® Xeon® Silver 4114 20-core processors was used. All were run on 61,914 queries (Additional file 2: Table S3) against 5680 references (Additional file 2: Table S4), which totally comprise 351,671,520 pairs

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BMC Genomics

ISSN: 1471-2164

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