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Fig. 1 | BMC Genomics

Fig. 1

From: Population structure of Apodemus flavicollis and comparison to Apodemus sylvaticus in northern Poland based on RAD-seq

Fig. 1

Summary of cataloque construction and SNP filtering steps for the complete dataset (left) and Apodemus flavicollis dataset. The graphic includes: Stacks parameters values (m, M, n), number of loci in the catalogue, number of SNPs filtered by minor allele frequency (MAF), which failed the Hardy-Weinberg equilibrium test at p<0.05 (HWE), SNPs removed due to an average depth, across individuals, lower than 20 (min-meanDP) and the total number of SNPs retained for further analysis

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