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Fig. 1 | BMC Genomics

Fig. 1

From: The structure, functional evolution, and evolutionary trajectories of the H+-PPase gene family in plants

Fig. 1

Phylogenetic evolutionary tree, protein motifs, and gene structures of H+-PPase gene family members. a A neighbor-joining (NJ) phylogenetic tree was constructed using the full-length sequence alignments of 124 H+-PPase genes identified using MUSCLE in MEGAX. Bootstrap supports are indicated by the color of the branches. OTUs are labeled as follows: red algae (red); Mamiellophyceae (dark blue); Chlorophyceae (light blue); Bryophytes (light green); Ferns (dark green); Angiosperm (black). Color blocks denote subtypes in angiosperms, with type Ia (red), type non-Ia (orange), and type II (green) denoted. b Motifs of the H+-PPase proteins. The rectangles indicate the length and positions of motifs. The different colors indicate 15 motifs (left panel). The sequence logo for each motif is shown in Additional file 3. c Gene structures of the H+-PPase genes. The lengths of rectangles and lines are scaled according to mRNA length. CDSs (green rectangles), UTRs (yellow rectangles), and introns (black line) are denoted

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