Table 3 Performance of the PangTreeBuild algorithm
From: Getting insight into the pan-genome structure with PangTree
Dataset | Number of genomes | Total sequence length | MSA file size | Computation time | Memory peak |
|---|---|---|---|---|---|
Ebola pan-genome Simulated | 160 | 3Mbp | 4.9MB | 2m44s | 280MB |
- without rearrangements | 138 | 13.8Mbp | 24MB | 20m25s | 1.18GB |
- with rearrangements | 138 | 13.8Mbp | 27MB | 24m46s | 1.38GB |