Fig. 3
From: Comparing copy-number profiles under multi-copy amplifications and deletions
Violin plots of the normalized RF distances for our improved approximation (heuristic), the algorithm that counts flat intervals (flat), the ZZS algorithm for the MEDICC model (ZZS), and the Euclidean distance on error-free data. Each plot summarizes 50 reconstructed trees with, from left to right: (top row) l=10,50 and 100 leaves; (second row) n=10,100 and 250 genes per chromosome; (third row) duplication rate Δ=0.25,0.5 and 0.75; (fourth row) possible number of events per branch (emin,emax)=(2,4),(5,10) and (20,40). On each row, the other parameters were set to their default as discussed in the text