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Table 1 Examples of rnpB predictions by P Finder compared with BCheck

From: P finder: genomic and metagenomic annotation of RNase P RNA gene (rnpB)

Structural TypeAccesionP FinderBCheckStrand
StartEndStartEnd
A-Type (Bacteria and Archaea)
 trachomatisNC_022118.1457146457551457145457548plus
 Escherichia coli LF82NC_011993.13317722331809833177263318098minus
 Klebsiella pneumoniae MGH 78578NC_009648.13896359389674138963633896741minus
 Halobacteroides halobius DSM 5150NC_019978.11887825188817818878241888177plus
 Cyanobacterium aponinum PCC 10605NC_019776.11149026114940111490251149400plus
 Candidatus Korarchaeum cryptofilumNC_010482.1603218603511603217603510plus
 Methanobacterium sp. SWAN-1NC_015574.12345793234608623457922346085plus
 Picrophilus torridus DSM 9790NC_005877.1818122818422818121818421plus
 Methanobacterium sp. AL-21NC_015216.1221739222031221738222030plus
B-Type
 Mycoplasma conjunctivae HRC/581NC_012806.1816571816858816570816857plus
 CandidatusPhytoplasmaasterisNC_007716.1652124652495652117652499minus
 Bacillus subtilis QB928NC_018520.12310826231120623108182311211minus
 Streptococcus pyogenes MGAS6180NC_007296.11389794139016213897861390167minus
 Staphylococcus aureus T0131NC_017347.11533810153418915338021534194minus
C-Type
 Sphaerobacter thermophilus DSM 20745NC_013523.117109221711286--plus
 Thermomicrobium roseum DSM 5159NC_011959.1714587714936--minus
M-Type      
 Methanothermococcus okinawensis IH1NC_015636.1713221713458713220713457plus
 Methanocaldococcus vulcanius M7NC_013407.11569639156989615696381569895plus
 Archaeoglobus fulgidus DSM 4304NC_000917.186045862798604486278plus
 Methanotorris igneus Kol 5NC_015562.11095229109548410952281095483plus
 Methanocaldococcus jannaschiiNC_000909.1643505643762643504643761plus
 Methanococcus maripaludis C7NC_009637.1992687992925992686992924plus
 Methanococcus vannielii SBNC_009634.11218466121870512184651218704plus
 Methanocaldococcus fervens AG86NC_013156.11009728100998510097271009984plus
T-Type      
 Caldivirga maquilingensis IC-167NC_009954.116900261690220--plus
 Pyrobaculum aerophilum str. IM2NC_003364.1542975543185--plus
 Pyrobaculum arsenaticum DSM 13514NC_009376.1124150124362--plus
 Pyrobaculum calidifontis JCM 11548NC_009073.1104104104313--minus
 Pyrobaculum islandicum DSM 4184NC_008701.110635721063783--minus
 Pyrobaculum neutrophilum V24StaNC_010525.1114806115020--minus
 Pyrobaculum oguniense TE7NC_016885.120392192039431--minus
 Thermoproteus tenax Kra 1NC_016070.112266501226847--minus
 Thermoproteus uzoniensis 768-20NC_015315.118107691810975--minus