Table 5 List of candidate genes for bearing habit and phenology-related traits
Trait | SNP associated using GWAS | Chromo-some | Physical position a | LD block interval a / Definition block method | GeneID | Physical position interval a | Functional annotation |
|---|---|---|---|---|---|---|---|
Bearing habit | AX-171191765 | 11 | 20,831,267 | 20,831,267 - 20,865,013 (33 kb) / Solid spine of LD | 109,017,990 | 20,831,874 - 20,834,977 | uncharacterized protein LOC109017990 |
Budbreak date | AX-171179714 | 1 | 6,514,832 | 6,511,521 - 6,528,313 (16 kb) / Solid spine of LD | 108,987,988 | 6,512,784 - 6,520,863 | uncharacterized protein LOC108987988 |
Budbreak date | AX-171557178 | 2 | 36,586,423 | 36,535,050 - 36,613,482 (78 kb) / Solid spine of LD | 108,983,408 | 36,536,110 - 36,536,482 | GrpE-like protein |
108,984,642 | 36,549,629 - 36,555,410 | 65-kDa microtubule-associated protein 1-like | |||||
108,984,651 | 36,557,793 - 36,562,849 | homolog of mammalian lyst-interacting protein 5 | |||||
108,983,414 | 36,564,185 - 36,568,214 | indole-3-acetate O-methyltransferase 1-like | |||||
108,984,666 | 36,576,304 - 36,582,108 | uncharacterized protein LOC108984666 | |||||
108,984,671 | 36,582,611 - 36,587,786 | putative BPI/LBP family protein At1g04970 | |||||
108,984,682 | 36,601,277 - 36,607,484 | transcription initiation factor TFIID subunit-6-like | |||||
108,984,689 | 36,610,257 - 36,612,478 | cell division protein FtsZ homolog 1, chloroplastic-like | |||||
Male flowering date | AX-171147588 | 11 | 31,874,617 | 31,868,402 - 31,887,998 (19 kb) / Solid spine of LD | 108,984,910 | 31,868,783 - 31,870,048 | uncharacterized protein LOC108984910 |
108,984,907 | 31,884,256 - 31,887,060 | probable trehalose-phosphate phosphatase D | |||||
Male flowering date | AX-171578684 | 4 | 5,966,307 | 5,946,348 - 6,009,859 (63 kb) / Solid spine of LD | 109,020,754 | 5,953,569 - 5,954,197 | uncharacterized protein LOC109020754 |
109,022,114 | 5,954,514 - 5,956,355 | trichome birefringence-like 13 protein | |||||
109,022,113 | 5,960,058 - 5,960,714 | uncharacterized protein LOC109022113 | |||||
109,022,028 | 5,984,567 - 5,985,798 | uncharacterized protein LOC109022028, transcript variant X2 | |||||
Male flowering date | AX-171559197 | 6 | 13,733,426 | 13,733,274 - 13,733,426 (< 1 kb) / Confidence interval |  | – | – |
Hetero-dichogamy | AX-171218000 | 11 | 31,885,611 | 31,868,402 - 31,887,998 (19 kb) / Solid spine of LD | 108,984,910 | 31,868,783 - 31,870,048 | uncharacterized protein LOC108984910 |
108,984,907 | 31,884,256 - 31,887,060 | probable trehalose-phosphate phosphatase D | |||||
Female flowering date | AX-170990138 | 1 | 9,298,520 | 9,298,520 - 9,300,288 (1 kb) / Confidence interval | 108,998,539 | 9,298,602 - 9,300,352 | chromosome transmission fidelity protein 8 homolog, mRNA |