Table 2 Statistic summary of the ddRADseq data for the mapping population of spotted scat
Type | Item | Female parent | Male parent | Average of progeny |
|---|---|---|---|---|
Raw data | GC_Rate (%) | 40.17 | 40.16 | 40.66 |
Q20_Rate (%) | 96.77 | 96.74 | 94.71 | |
Q30_Rate (%) | 91.87 | 91.85 | 89.35 | |
Raw reads | 57,224,366 | 60,919,376 | 8,177,854 | |
Raw base (bp) | 8,411,981,802 | 8,955,148,272 | 1,202,173,359 | |
Depth | 195.10× | 207.69× | 27.88× | |
Clean data | GC_Rate (%) | 40.12 | 40.12 | 40.58 |
Q20_Rate (%) | 96.77 | 96.74 | 94.75 | |
Q30_Rate (%) | 91.87 | 91.84 | 89.40 | |
Clean reads | 56,800,034 | 60,536,986 | 8,099,577 | |
Clean base (bp) | 8,345,222,442 | 8,894,041,121 | 1,189,864,968 | |
Effective data rate (%) | 99.21 | 99.32 | 98.95 |