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Table 6 Prediction of candidate genes based on SNP markers associated with growth traits

From: ddRADseq-assisted construction of a high-density SNP genetic map and QTL fine mapping for growth-related traits in the spotted scat (Scatophagus argus)

MarkerLGPosition (cM)ScaffoldAnnotationGene
R1_192243LG258.917scaffold1197Protein shisa-6Shisa6
R1_98424LG237.607scaffold339Cell death-inducing p53-target protein 1Cdip1
    MKL/myocardin-like protein 2Mrtfb
R1_235502LG542.973scaffold1374Apoptotic protease-activating factor 1Apaf1
R1_269416LG525.992scaffold1410Protein bicaudal D homolog 1-likeBicd1
R1_99132LG544.787scaffold195MANSC domain-containing protein 1Mansc1
R1_275284LG543.022scaffold273Probable tubulin polyglutamylase TTLL1Ttll1
R1_151287LG540.377scaffold75Serine/threonine-protein kinase pim-3Pim3
R1_254692LG540.042scaffold86Nucleosome assembly protein 1-like 1 isoform X3Nap1l1
R1_205729LG1143.640scaffold381Fibronectin type-III domain-containing proteinFndc
    LRRN4 C-terminal-like proteinLrrn4cl
R1_113228LG130.543scaffold1603Centrosomal protein of 131 kDa isoform X1Cep131
    E3 ubiquitin-protein ligase RNF213RNF213
    Nuclear protein localization protein 4 homologNploc4
R1_232824LG2431.648scaffold1004Cadherin-22-like isoform X3Cad22l
R1_119872LG2431.488scaffold1050Transcription cofactor vestigial-like protein 4Vgll4
    Ubiquitin-like modifier-activating enzyme ATG7Atg7
R1_216145LG2470.541scaffold123Tribbles homolog 1Trib1
R1_269254LG2417.017scaffold1587Protein FAM19A1 isoform X1Fam19a1
R1_79166LG2470.574scaffold1590LReO_3 proteinLReO_3
R1_287640LG2470.906scaffold1611ETS-related transcription factor Elf-3-like isoform X1Elf3l
R1_50011LG2418.813scaffold1648Ataxin-1Atxn1
    HMG box-containing protein 1-likeHBP1
R1_255417LG2418.653scaffold225Dynein heavy chain 1, axonemalDnah17
R1_115418LG2431.488scaffold551Guanine nucleotide-binding protein G(s) subunit alphaGalphas
    Leucine zipper protein 2Lzp2
    Tubulin beta chain-likeTubbl
R1_137885LG2447.525scaffold594Voltage-dependent calcium channel subunit alpha-2/delta-3Cacna2d3
R1_1854LG2418.813scaffold619Prickle-like protein 2Prickle2
R1_219435LG2431.194scaffold820Phosphatidate cytidylyltransferase, mitochondrialTam41
R1_227285LG2473.712scaffold839PDZ domain-containing protein 4Pdzd2
R1_129529LG2417.156scaffold971Protein kinase C, deltaPKCΔ
    Scm-like with four MBT domains protein 1Sfmbt1
  1. LG Linkage group