Skip to main content

Table 1 Statistics for the main B. oleae genome assemblies generated

From: De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly

GenBank Accession

Name

# scaffolds/contigs

Total length (Mb)

Largest contig (Mb)

N50 (Mb)

L50

# N’s per 100 kb

GCA_001188975.2

Illumina-PacBio

36,198

472

5.1

0.14

474

10,853.91

GCA_001188975.4

10x-All

39,141

489

19.4

4.69

30

5493.82

  1. Quality metrics were generated using Quast [43]. N50 value is the scaffold/contig length at which half of the genome is contained in scaffolds/contigs at or above that length. L50 is the number of contigs needed to reach N50
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us