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Table 2 Classification of transposable elements (TE) identified in B. oleae genome

From: De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly

ClassOrderNumberPercentage
Class IDIRS300.06
LARD11112.12
LINE780214.85
LTR833915.88
PLE50.01
SINE2060.39
TRIM8311.58
No order780.15
Several orders110.02
Total18,41334.99
Class IIHelitron770014.66
MITE1130.21
Maverick1330.25
TIR15,30129.13
No order4810.92
Several orders210.04
Total23,74945.13
Simple Sequence Repeats1000.19
No category10,36119.73
Total52,623100
  1. Nine de novo and similarity based TE identification tools included in the PiRATE pipeline [67] were used to generate a library of TE followed by classification using PASTEC [69]