De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly

Table 3 Summary of orthologous proteins among six most closely related Dipteran insects

	B. dorsalis	B. oleae	C. capitata	D. melanogaster	M. domestica	Z. cucurbitae
Total proteins	20,833	25,885	22,949	30,588	19,552	24,215
Proteins in orthogroups	20,296	21,745	22,135	25,523	16,931	23,477
Unassigned proteins	537	4140	814	5065	2621	738
Proteins in orthogroups (%)	97.4	84	96.5	83.4	86.6	97
Unassigned proteins (%)	2.3	16	3.5	16.6	13.4	3
Orthogroups containing species	11,417	10,991	11,294	10,274	10,304	11,521
Species-specific orthogroups	2	17	12	113	30	5
Proteins in species-specific orthogroups (%)	6	90	71	490	131	23
Proteins in species-specific orthogroups (%)	0	0.3	0.3	1.6	0.7	0.1

Bactrocera dorsalis, Bactrocera oleae, Ceratitis capitata, Drosophila melanogaster, Musca domestica, and Zeugodacus cucurbitae. Orthologous proteins were identified and grouped using OrthoFinder [87]. % = percentage, See Supplementary Table S16 for the source of proteins used

ISSN: 1471-2164