Skip to main content

Table 5 Characterization of 48 Avr effector candidates of Puccinia striiformis f. sp. tritici derived from secreted protein genes

From: Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

Avr

Associated

SPLb

EffectorP

AAd

Ce

 

Polymorphicf

Pfam

Motifg

candidate

Avr genea

%

Effector

%c

length

%

Conservation

in Pst

Family

 

PS_11–281_00004726

1

99.8

Yes

67.4

115

5.22

Ps. specific

Yes

 

[Y/F/W]xC

PS_11–281_00016865

6

99.8

Yes

88.5

115

6.09

Ph. specific

Yes

 

[Y/F/W]xC

PS_11–281_00015631

7

99.7

Yes

94.5

133

6.02

P. specific

Yes

  

PS_11–281_00002472

7

99.8

Yes

84.7

153

3.92

P. specific

Yes

 

RXLR-Like; [Y/F/W]xC

PS_11–281_00009923

76

99.9

Yes

85.2

127

5.51

Ps. specific

Yes

 

[Y/F/W]xC

PS_11–281_haploid_00011016

17

99.7

Yes

94.5

133

6.02

P. specific

Yes

 

[Y/F/W]xC

PS_11–281_00011501

32, SP

67.7

Yes

57.4

307

4.56

Ps. specific

Yes

 

[Y/F/W]xC

PS_11–281_00002262

8

96.3

No

73.3

112

4.46

Ps. specific

Yes

 

RXLR-Like; [Y/F/W]xC

PS_11–281_00010750

27

97.5

No

88.1

506

3.56

P. specific

Yes

  

PS_11–281_00012402

7, 27

95.7

No

51

140

0.00

Ps. specific

Yes

  

PS_11–281_00014479

7, 27, 43, Exp2

83.1

No

95.7

186

3.23

Basidiomycetes orthologs

Yes

  

PS_11–281_haploid_00010301

6

97.5

No

95.7

524

3.82

P. specific

Yes

  

PS_11–281_00009924

Tr1

81.5

No

95.7

1371

0.58

P. specific

Yes

  

PS_11–281_00009841

44

98.8

No

91.5

783

0.13

P. specific

Yes

  

PS_11–281_00009866

17

60.9

No

88.8

406

1.23

Ps. specific

Yes

  

PS_11–281_00013192

27

97.1

No

92.1

627

0.64

Ps. specific

Yes

  

PS_11–281_00014125

SP

98.2

No

96.9

329

3.65

/i

Yes

  

PS_11–281_00016661

43, Exp2, SP

92.5

No

96.9

574

0.35

Ps. specific

Yes

  

PS_11–281_00003286

27

89.2

No

92.6

250

0.80

P. specific

Yes

 

RXLR-Like

PS_11–281_00011083

6, SP

96.3

No

99

936

1.60

P. specific

Yes

  

PS_11–281_00014412

6, SP

84.6

No

95.6

696

1.58

P. specific

Yes

  

PS_11–281_haploid_00003208

10, 32

79.8

No

91.2

468

0.21

P. specific

Yes

  

PS_11–281_haploid_00006920

6

85.7

No

99.1

524

1.15

P. specific

Yes

 

[L/I]xAR

PS_11–281_haploid_00006507

6

99.0

No

95.4

589

0.85

P. specific

Yes

 

RXLR-Like

PS_11–281_haploid_00002163

9, 17

60.9

No

93.4

443

1.81

Ps. specific

Yes

  

PS_11–281_haploid_00004265

6

57.8

No

94.9

1325

4.53

Ps. specific

Yes

PF00840.20

 

PS_11–281_haploid_00002648

7, Tr1

66.9

No

97.6

812

0.86

P. specific

Yes

  

PS_11–281_00004920

7, 27, 43, Tr1

72.2

No

86

323

0.93

/

Yes

 

RXLR-Like

PS_11–281_00014999

27

96.6

No

93.6

1029

0.29

/

Yes

  

PS_11–281_00001788

27

66.8

No

98.9

1989

1.16

P. specific

Yes

PF03033.20

RXLR-Like; [Y/F/W]xC

PS_11–281_00011666

10, 24, 27, Tr1

92.0

No

95.1

1165

0.09

P. specific

Yes

PF02358.16

 

PS_11–281_00011857

SP

99.8

No

98.8

760

1.48

/

Yes

 

RXLR-Like

PS_11–281_00003160

43

97.5

No

99.1

993

0.91

P. specific

Yes

PF00450.22

 

PS_11–281_00006608

27

60.2

No

97.3

550

2.00

P. specific

Yes

PF01575.19

 

PS_11–281_00012767

7, 43, Exp2

92.2

No

94.3

1933

0.16

/

Yes

  

PS_11–281_00003315

10, 32

99.7

No

90.5

400

1.25

P. specific

Yes

PF02156.15

 

PS_11–281_haploid_00005879

44

87.1

No

98.9

670

0.60

/

Yes

  

PS_11–281_00011495

6

92.8

No

95.6

1206

1.16

/

Yes

PF01735.18

 

PS_11–281_00013988

Tr1

62.3

No

78.9

416

0.48

/

Yes

PF12776.7

 

PS_11–281_00003121

7, 43, 44

65.0

No

97.6

1498

0.93

Basidiomycetes orthologs

Yes

PF01239.22

 

PS_11–281_00005153

Tr1

79.2

No

93.9

1524

0.46

/

Yes

PF01369.20

RXLR

PS_11–281_00013742

7

97.6

No

94

406

0.74

/

Yes

PF05890.12

 

PS_11–281_00012902

7

99.5

No

97.8

507

0.79

/

Yes

PF01565.23

 

PS_11–281_00012863

9, SP

55.0

No

88.2

848

1.06

/

Yes

PF07217.11

 

PS_11–281_haploid_00007789

6

56.5

No

97.1

649

0.92

/

Yes

PF09118.11

 

PS_11–281_haploid_00010769

44

91.0

No

88.1

452

1.33

Basidiomycetes orthologs

Yes

PF00704.28

 

PS_11–281_haploid_00005482

32

99.9

No

99

630

0.95

/

Yes

PF09286.11

 

PS_11–281_haploid_00011285

44

60.6

No

98.7

541

1.11

/

Yes

PF00135.28

 
  1. aAssociated Avr gene included 1, 6, 7, 8, 9,10,17, 24, 27, 32, 43, 44, 76, Exp2, SP and Tr1, which are the abbreviations for the AvYr1, AvYr6, AvYr7, AvYr8, AvYr9, AvYr10, AvYr17, AvYr24, AvYr27, AvYr32, AvYr43, AvYr44, AvYr76, AvYrExp2, AvYrSP and AvYrTr1, respectively
  2. bSPL = signal peptide likelihood
  3. c The percentage indicates the probability of the protein to be effector or non-effector based on the machine learning evaluation in EffectorP
  4. dAA Amino acid
  5. eC Cysteine
  6. fThe polymorphisms of effector candidates were determined by searching homologous sequences from publicly available protein database in Pst
  7. gMotifs RxLR, RxLR-like ([R/K/H]x[L/M/I/F/Y/W]x), YxSL[R/K], [L/I] xAR, [R/K]CxxCx12H, [R/K]VY[L/I] R, G[I/F/Y][A/L/S/T]R and [Y/F/W]xC were searched for motifs in the effector candidates
  8. hP Puccinia
  9. i/ No conservation detected in the Fungi Kingdom
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us