Table 4 Top 10 significant enriched gene sets in both the CON group and the PRO group (interaction effect). CON is the training, Inter is the interaction effect. ES is the enrichment score. The ES reflects the degree to which the genes in a gene set are overrepresented at the top or bottom of the entire ranked list of genes
GSEA | Name of biological process | ES CON | ES Inter | q-value CON | q-value Inter |
|---|---|---|---|---|---|
1 | Kegg ECM receptor interaction | 0.70 | 0.58 | 0.000 | 0.000 |
2 | Naba core matrisome | 0.73 | 0.47 | 0.000 | 0.000 |
3 | Naba ECM glycoproteins | 0.73 | 0.46 | 0.000 | 0.006 |
4 | Pid integrin1 pathway | 0.69 | 0.54 | 0.000 | 0.007 |
5 | Reactome integrin cell surface interactions | 0.63 | 0.51 | 0.000 | 0.012 |
6 | Biocarta RHO pathway | 0.81 | 0.62 | 0.000 | 0.019 |
7 | Pid TCR pathway | 0.64 | 0.51 | 0.000 | 0.032 |
8 | Reactome collagen formation | 0.60 | 0.52 | 0.000 | 0.041 |
9 | Pid syndecan 1 pathway | 0.73 | 0.53 | 0.000 | 0.051 |
10 | Pid integrin 3 pathway | 0.53 | 0.54 | 0.000 | 0.051 |