Table 4 The identification numbers and FMRs under FDR =0.01 on Pfu dataset of various searching methods
From: A cost-sensitive online learning method for peptide identification
Method | Identification number | FMR | |
|---|---|---|---|
Sample PSM | Tide + Crux percolator | 6799 | 0.013 |
X!Tandem + percolator | 9889 | 0.011 | |
Mascot + PepDistiller | 9864 | 0.013 | |
Comet + Crux Percolator | 9922 | 0.009 | |
Tide + OLCS-Ranker | 6897 | 0.008 | |
Comet + OLCS-Ranker | 10603 | 0.009 | |
Sample peptide | Tide + crux percolator | 3878 | 0.016 |
X!Tandem + percolator | 5320 | 0.012 | |
Mascot + PepDistiller | 5360 | 0.015 | |
Comet + crux percolator | 5343 | 0.010 | |
Tide + OLCS-ranker | 3806 | 0.008 | |
Comet + OLCS-ranker | 5667 | 0.011 |