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Table 6 Primers designed for RT-qPCR of DEGs

From: Transcriptomic analysis of sea cucumber (Holothuria leucospilota) coelomocytes revealed the echinoderm cytokine response during immune challenge

Gene ID

P-values

Forward primer sequences (5′-3′)

Reverse primer sequences (5′-3′)

Differentially expressed genes(DEGs)

 CL3876.Contig4_Mix

0

TCACGGCATTGAGAACGG

CGGTGTCTGAACTTTGGGT

 Unigene38924_Mix

0

CAGACAAAAGCCTCAGAAATG

AAGAACCCAGAGCTGGAAAG

 Unigene36248_Mix

0

ATACGAAAAGCGGCAAACA

TCCATCTCAGACCCCAACTC

 Unigene1474_Mix

0

TCCATCTCAGACCCCAACTC

TTTCCATTGGGAGGTAAGC

 Unigene6464_Mix

0

TCACTGCGGCATTGATTC

GGTGCCCTTCCGTCAATT

 Unigene36250_Mix

0

GTGCAAAGAAGGGAAGGC

TCTGGTGATTTATGTTGTGGG

 Unigene42438_Mix

0

ACTCATGTGGATGGCACTAGC

GGAAGAAGGGACAGAATAAACC

 CL3998.Contig1_Mix

1.89E-260

AAGGATTATGGACGGGACAC

TTCTCAAACCACCAGAGGG

 Unigene1910_Mix

0

GTCAAACCAATAACAGCGAAAG

TGGACCAGACCAGGCAAA

 Unigene27584_Mix

0

CGTGCTTGCCGAGTTTGT

GCAGGCTATTGCTGTTGTTAA

 CL657.Contig6_Mix

0

AAGCAAGATAGACACTGTGGTTC

GATTGATGCCCCGTAAGC

 CL3619.Contig1_Mix

0

AGGGTAACAGGTTGGGTGAA

GCAGTAGTTGGAGCCATTGAA

 Unigene11374_Mix

0

TGCGTTTGTTGACTTTTGC

TGAAATGGTTCCGATTCTCA

 Unigene2830_Mix

0

TTTGCTGGAGTATTGTGGTTC

TGGGCTGTAGGGGCTTTA

 Unigene6841_Mix

2.03E-139

ACCCCAGATGACCTTTGACC

GTTAACACAATTTCTCCAGTTAGGA

 Unigene2638_Mix

1.05E-297

AGTTGATATTCACCAGCCTTGC

CCACTTTCCATGAAACCGTAA

 Unigene1366_Mix

2.56E-93

GGAGGTCAATGGTCATTTGG

ACCCCTGGTGACCCTACAT

 Unigene1518_Mix

7.31E-233

AAACACGGTATCTCCAGAATGA

AATGACCTTTGACCTCCACC

 Unigene16828_Mix

0

TTCAAAAGCAGTGCCAACG

CATTATCATCATCTTGCCGAAC

 Unigene3853_Mix

2.50E-62

CCACTTGGACAGCAGTGAAG

TGATGACCTGGTTTGAGAAGAC

Cytokine genes

 CCL3-X3

0.000883536

CGCAAAGGATTGTGATGGT

ACAGGAAGAGGCTATACAGACG

 CLL10

0.013152297

CTTACTGGGTTGGTAGTTTTGAC

GTGCGTTCTTGCCATTCTC

 CLL7A

0.00023473

TCTTGCTTCTCACCCGATTT

CCGTAGGGGACACCTCTTT

 CLL9-X3a

5.57E-09

TGGTGGAATAGTGGAGGGTG

GACTGGTTGGTTGAGGCTGT

 CLL9-X3b

0.003436624

AACAGACGGACAGTCATACAGC

TGGTTGAGCCCTTGATAGTG

 CLL9-X3c

0.005767319

CATTCCAGTTGGTGATGGC

TGATTTCCTCACCGCATTT

 CLL9-X3d

2.23E-07

CAGAAAGCCTGGGTAAAGC

GACCTGGACCAAACCTCATT

 EDRF1a

0.101229003

TTACAAGACTATCCTCCCCTCA

GCGATGCGATACTGATAAAGG

 EDRF1b

0.311031428

ATGGCTTTTGAGGATGGTG

GCTGCTGTATCTCAGGAGGAAA

 EDRF1c

0.000470648

ACCAACCACCATCCAACTG

TTCTCCTGATCCACCCCTAA

 EDRF1d

0.001415506

TCCCTTTATTGTTCCTGTGG

TGTCTCCGCTTTCCTGTAGTA

 IL-17

1.94E-07

AGGCTGGCTCGCTTCTT

ACGCTATCGCTCATTGGAC

 IL-17-2

5.40E-08

GTTGAGGCATTCACATTTCG

AACTTTCGGCAGTCCTTACAG

 IL-17B

1.36E-05

TACCATAGGAAGGGGATCTGT

AGACTTGCCCGACGATTT

 IL-17C/E

3.56E-23

AGGCACTCTTCTGCATTCTCC

GCTACTGAACGCTTGTTGACG

 TPO-I-7A2

1.90E-07

CGGCGGCATACAACAGA

ACATTGGGCATCCAGAACA

 TPO-I-7A3

0.003209029

GGTCCAAAGAAAGGCATCA

GGCTTGAAAGTAAGAAACCGT

 TPO-I-7B1

5.20E-08

GATTCAGCCTTCATTTTGGA

GCTTAGTATCTTTGGGTCTGTCTA

 TPO-I-7B2

0.000343861

GATTCAGCCTTCATTTTGGA

GCTTAGTATCTTTGGGTCTGTCTA

 TPO-I-7B3

0.7252968

TGGTCCAAGTGGTCTCCCT

CTGGTCCTCTGGTAAACAGTCAT

 TSP-4

0.086692271

CAGGAGTCTTATTTGGTATCTATGC

CAATGTGGCGATGGTGTTC