Fig. 2
Identification of differentially expressed genes (DEGs) between the (p) ppGpp0 mutant and WT by quasi-likelihood (QL) F-test in edgeR. a Expression level and fold change of each gene by comparing the (p) ppGpp0 mutant versus WT at 3 h. The X and Y axes correspond to mean of normalized log2-based count per million values (log2CPM) and log2((p) ppGpp0/WT at 3 h) ratio, respectively. b Expression level and fold change of each gene by comparing the WT at 6 h versus WT at 3 h. The X and Y axes correspond to mean of normalized log2-based count per million values (log2CPM) and log2(WT at 6 h /WT at 3 h) ratio, respectively