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Table 3 List of differentially expressed genesa associated with motility for the (p) ppGpp0 mutant versus WT at 3 h

From: The stringent response regulator (p) ppGpp mediates virulence gene expression and survival in Erwinia amylovora

AccessionGene DescriptionLog2FCbMeanc
EAMY_1508fliI, flagellum-specific ATP synthase−6.256.73
EAMY_1509fliH, flagellar assembly protein−5.986.74
EAMY_1456flgE, flagellar hook protein−5.979.06
EAMY_1511fliF, flagellar M-ring protein−5.737.65
EAMY_1457flgF, flagellar basal body rod protein−5.717.79
EAMY_1510fliG, flagellar motor switch protein−5.666.86
EAMY_1453flgB, flagellar basal body protein−5.47.22
EAMY_1459flhH, flagellar L-ring protein−5.336.57
EAMY_1455flgD, flagellar hook capping protein−5.267.96
EAMY_1454flgC, flagellar basal body rod protein−5.237.01
EAMY_1507fliJ, flagellar biosynthesis chaperone−5.226.24
EAMY_1505fliL, flagellar basal body-associated protein−5.036.53
EAMY_1506fliK, flagellar hook-length control protein−4.887.96
EAMY_1503fliN, flagellar motor switch protein−4.776.23
EAMY_1458flgG, flagellar basal body rod protein−4.717.75
EAMY_1504fliM, flagellar motor switch protein−4.667.17
EAMY_1460flgI, flagellar P-ring protein−4.336.58
EAMY_1461flgJ, flagellar rod assembly protein−4.196.49
EAMY_1502fliO, flagellar biogenesis protein−4.135.93
EAMY_1512fliE, flagellar hook-basal body protein−3.675.80
EAMY_1501fliP, flagellar biosynthetic protein−3.546.15
EAMY_1452flgA, flagellar basal body P-ring biosynthesis protein−3.36.32
EAMY_1500fliQ, flagellar biosynthetic protein−2.814.63
EAMY_2139fliA, RNA polymerase sigma factor−2.416.33
EAMY_2138fliZ, flagellar regulatory protein−2.155.81
EAMY_2143fliS, flagellin-specific chaperone−2.086.03
EAMY_2144fliT, flagellar export chaperone−1.895.71
EAMY_2142fliD, flagellar capping protein−1.757.72
EAMY_2682fliR, flagellar biosynthetic protein−1.542.85
EAMY_1499fliR, flagellar biosynthetic protein−1.55.59
EAMY_1463flgL, flagellar hook-associated protein−1.286.56
EAMY_1462flgK, flagellar hook-associated protein−1.257.56
EAMY_2660flgJ, flagellar rod assembly protein−1.002.41
EAMY_2662flgH3, Flagellar L-ring protein−1.071.70
EAMY_2689fliK3, flagellar hook-length control protein−1.063.62
  1. aDifferentially expressed genes (DEGs) between the (p) ppGpp0 mutant and WT at 3 h with |log2FC| value ≥ 1 and an adjusted p value < 0.05. WT: wild type. FC: fold change. FC values below 0 mean that the gene has lower expression in the (p) ppGpp0 mutant than in WT.
  2. blog2FC valus was calculated by the log based 2 value of (p) ppGpp0 / WT at 3 h
  3. cThe average of log2CPM was calculated. CPM: count per million reads