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Table 7 List of differentially expressed genesa associated with translation for the (p) ppGpp0 mutant versus WT at 3 h

From: The stringent response regulator (p) ppGpp mediates virulence gene expression and survival in Erwinia amylovora

Accession

Gene Description

Log2FCb

Meanc

Translation initiation

 EAMY_1327

infA, translation initiation factor IF-1

1.52

9.39

Translation elongation

 EAMY_0232

tufA, translation elongation factors

2.24

12.20

ribosomal protein synthesis

 rpl

  EAMY_0303

rplM, ribosomal protein L13

2.70

12.08

  EAMY_2320

rplY, ribosomal protein L25

2.65

11.32

  EAMY_3376

rplN, ribosomal protein L14

1.93

11.83

  EAMY_3375

rplX, ribosomal protein L24

1.93

11.86

  EAMY_3374

rplE, ribosomal protein L5

1.90

12.34

  EAMY_0236

rplA, ribosomal protein L1

1.81

10.97

  EAMY_3371

rplF, ribosomal protein L9

1.75

11.37

  EAMY_0235

rplK, ribosomal protein L11

1.68

10.54

  EAMY_3370

rplR, ribosomal protein L18

1.60

10.61

  EAMY_3367

rplO, ribosomal protein L15

1.54

11.59

  EAMY_3142

rplI, ribosomal protein L9

1.40

10.49

  EAMY_0332

rplU, ribosomal protein L21

1.36

10.76

  EAMY_3360

rplQ, ribosomal protein L17

1.27

10.39

  EAMY_3386

rplC, ribosomal protein L3

1.17

11.07

  EAMY_3385

rplD, ribosomal protein L4

1.15

10.38

 rpm

  EAMY_0136

rpmE, ribosomal protein L31

2.64

9.97

  EAMY_0078

rpmG, ribosomal protein L33

2.43

10.07

  EAMY_3368

rpmD, ribosomal protein L30

1.8

10.52

  EAMY_0077

rpmB, ribosomal protein L28

1.76

10.47

  EAMY_0333

rpmA, ribosomal protein L27

1.64

11.06

 rps

  EAMY_0304

rpsI, ribosomal protein S9

2.86

11.55

  EAMY_0352

rpsO, ribosomal protein S15

2.51

10.25

  EAMY_0417

rpsU, ribosomal protein S21

2.12

10.15

  EAMY_2940

rpsT, ribosomal protein S20

1.84

10.18

  EAMY_2760

rpsB, ribosomal protein S2

1.82

11.96

  EAMY_3373

rpsN, ribosomal protein S14

1.76

11.7

  EAMY_3372

rpsH, ribosomal protein S8

1.72

11.23

  EAMY_3369

rpsE, ribosomal protein S5

1.57

11.12

  EAMY_3143

rpsR, ribosomal protein S18

1.30

10.04

  EAMY_3390

rpsG, ribosomal protein S7

1.26

10.84

  EAMY_0816

rpsP, ribosomal protein S16

1.22

9.43

  EAMY_3145

rpsF, ribosomal protein S6

1.21

10.8

  EAMY_3387

rpsJ, ribosomal protein S10

1.24

10.35

  1. aDifferentially expressed genes (DEGs) between the (p) ppGpp0 mutant and WT at 3 h with |log2FC| value ≥ 1 and an adjusted p value < 0.05. WT: wild type. FC: fold change. FC values over 0 mean that the gene has higher expression in the (p) ppGpp0 mutant than in WT.
  2. blog2FC valus was calculated by the log based 2 value of (p) ppGpp0 / WT at 3 h
  3. cThe average of log2CPM was calculated. CPM: count per million reads
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BMC Genomics

ISSN: 1471-2164

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