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Table 7 List of differentially expressed genesa associated with translation for the (p) ppGpp0 mutant versus WT at 3 h

From: The stringent response regulator (p) ppGpp mediates virulence gene expression and survival in Erwinia amylovora

AccessionGene DescriptionLog2FCbMeanc
Translation initiation
EAMY_1327infA, translation initiation factor IF-11.529.39
Translation elongation
EAMY_0232tufA, translation elongation factors2.2412.20
ribosomal protein synthesis
rpl
  EAMY_0303rplM, ribosomal protein L132.7012.08
  EAMY_2320rplY, ribosomal protein L252.6511.32
  EAMY_3376rplN, ribosomal protein L141.9311.83
  EAMY_3375rplX, ribosomal protein L241.9311.86
  EAMY_3374rplE, ribosomal protein L51.9012.34
  EAMY_0236rplA, ribosomal protein L11.8110.97
  EAMY_3371rplF, ribosomal protein L91.7511.37
  EAMY_0235rplK, ribosomal protein L111.6810.54
  EAMY_3370rplR, ribosomal protein L181.6010.61
  EAMY_3367rplO, ribosomal protein L151.5411.59
  EAMY_3142rplI, ribosomal protein L91.4010.49
  EAMY_0332rplU, ribosomal protein L211.3610.76
  EAMY_3360rplQ, ribosomal protein L171.2710.39
  EAMY_3386rplC, ribosomal protein L31.1711.07
  EAMY_3385rplD, ribosomal protein L41.1510.38
rpm
  EAMY_0136rpmE, ribosomal protein L312.649.97
  EAMY_0078rpmG, ribosomal protein L332.4310.07
  EAMY_3368rpmD, ribosomal protein L301.810.52
  EAMY_0077rpmB, ribosomal protein L281.7610.47
  EAMY_0333rpmA, ribosomal protein L271.6411.06
rps
  EAMY_0304rpsI, ribosomal protein S92.8611.55
  EAMY_0352rpsO, ribosomal protein S152.5110.25
  EAMY_0417rpsU, ribosomal protein S212.1210.15
  EAMY_2940rpsT, ribosomal protein S201.8410.18
  EAMY_2760rpsB, ribosomal protein S21.8211.96
  EAMY_3373rpsN, ribosomal protein S141.7611.7
  EAMY_3372rpsH, ribosomal protein S81.7211.23
  EAMY_3369rpsE, ribosomal protein S51.5711.12
  EAMY_3143rpsR, ribosomal protein S181.3010.04
  EAMY_3390rpsG, ribosomal protein S71.2610.84
  EAMY_0816rpsP, ribosomal protein S161.229.43
  EAMY_3145rpsF, ribosomal protein S61.2110.8
  EAMY_3387rpsJ, ribosomal protein S101.2410.35
  1. aDifferentially expressed genes (DEGs) between the (p) ppGpp0 mutant and WT at 3 h with |log2FC| value ≥ 1 and an adjusted p value < 0.05. WT: wild type. FC: fold change. FC values over 0 mean that the gene has higher expression in the (p) ppGpp0 mutant than in WT.
  2. blog2FC valus was calculated by the log based 2 value of (p) ppGpp0 / WT at 3 h
  3. cThe average of log2CPM was calculated. CPM: count per million reads