Table 1 CNVs predicted by CNVnator that passed the stringent filtering criteria. The CNV Del2 is shared between the HC control and HC case1, whereas two CNVs (Del1 and Del3) are private in HC case1 and the HC control respectively. No CNVs passed the filtering in HC case2. P-value: p-value of the mean normalized read depth value difference from genomic average; q0: fraction of reads mapped with mapping quality equal to zero
CNV ID | Sample | Type of CNV | CFA11 coordinates | P-value | q0 |
|---|---|---|---|---|---|
Del1 | HC case1 | deletion | 38,625,401 - 38,626,900 | 4.8 × 10−4 | 0 |
Del2 | HC control | deletion | 40,202,601 - 40,204,100 | 7.5 × 10−5 | 0 |
Del2 | HC case1 | deletion | 40,202,301 - 40,204,100 | 9.0 × 10−6 | 0 |
Del3 | HC control | deletion | 40,858,901 - 40,862,600 | 4.3 × 10−11 | 0 |