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Table 1 Differential gene regulation by (p) ppGpp in PstDC3000 and PssB728a

From: Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae

  Homolog genes inversely regulatedPstDC3000 (unique genes)PssB728a (unique genes)
SymbolFunctional classification (COGs) UpDownUpDown
 Type III secretion system003707
JTranslation, ribosomal structure and biogenesis40203
ARNA processing and modification00000
KTranscription139814
LReplication, recombination and repair481508
DCell cycle control, cell division, chromosome partitioning21101
VDefense mechanisms101106
TSignal transduction mechanisms1631009
MCell wall/membrane/envelope biogenesis1418214
NCell motility50103
UIntracellular trafficking, secretion, and vesicular transport151119
OPosttranslational modification, protein turnover, chaperones40502
CEnergy production and conversion150713
GCarbohydrate transport and metabolism90918
EAmino acid transport and metabolism2011519
FNucleotide transport and metabolism10300
HCoenzyme transport and metabolism60201
ILipid transport and metabolism93314
PInorganic ion transport and metabolism1601004
QSecondary metabolites biosynthesis, transport and catabolism3016219
SFunction unknown1016419929145
Total 2589136239259
  1. COG Clusters of orthologous groups (http://www.ncbi.nlm.nih.gov/COG). See methods for description