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Table 2 List of phytotoxin genes differentially regulated by (p) ppGpp in PstDC3000 and PssB728a

From: Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae

Locus tag

Description

(p)ppGpp0PstDC3000 /PstDC3000

(p)ppGpp0PssB728a /PssB728a

DC3000

   

Phytotoxin

   

Coronatine

   

PSPTO_4704

DNA-binding response regulator CorR

− 2.59

/

PSPTO_4705

sensor histidine kinase CorS

− 1.81

/

Coronamic acid

 PSPTO_4710

coronamic acid synthetase CmaB

− 2.02

/

 PSPTO_4711

coronamic acid synthetase CmaC

−1.53

/

 PSPTO_4712

coronamic acid synthetase, CmaT

−1.68

/

 PSPTO_4714

CmaU protein

−1.15

/

B728a Syringomycin

 PSYR_2607

regulatory protein SyrF

/

−2.16

 PSYR_2608

amino acid adenylation SyrE

/

−1.81

 PSYR_2609

Alpha/beta hydrolase fold SyrC

/

−1.34

 PSYR_2611

amino acid adenylation SyrB1

/

−1.23

 PSYR_2612

SyrP protein

/

−2.97

 PSYR_2613

cyclic peptide transporter SyrD

/

−2.03

  1. DEGs were differentially expressed genes in the (p)ppGpp0PstDC3000 and (p)ppGpp0PssB728a with p-value < 0.05 between the WT and the ppGpp0 mutants. ‘/’ represents that gene is not present