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Table 1 The number and proportion of genomes within major C. jejuni clonal complexes and C. coli Clades from the collection used in this study that encode intact and inactive capC autotransporter genes. The number and proportion of genomes that do not encode capC or capD is also shown

From: Campylobacter jejuni and Campylobacter coli autotransporter genes exhibit lineage-associated distribution and decay

ClonalTotalcapC1capC2capC3capC4capC/capD
ComplexGenomesIntactInactiveIntactInactiveIntactInactiveIntactInactiveabsent
ST-2115000000045(3%)02(0.13%)1452(96.8%)
ST-2211200000000112(100%)
ST-421051(0.95%)00008(7.61%)0096(91.4%)
ST-45543309(56.9%)20(3.68%)00203(37.3%)9(1.65%)002(0.36%)
ST-483752(0.53%)7(1.86%)003(0.8%)361(96.2%)002(0.53%)
ST-52820000082(100%)000
ST-6113000001(0.76%)4(3.07%)00125(96.1%)
ST-20630000000297(99%)01(0.33%)2(0.66%)
ST-2573940000019(4.82%)0375(95.1%)0
ST-2839998(98.9%)0001(1.01%)0000
ST-3533394(1.17%)0003(0.88%)311(91.7%)18(5.30%)1(0.29%)2(0.58%)
ST-35421400000213(99.5%)1(0.46%)00
ST-40356055(98.2%)0001(1.78%)000
ST-44316800001(0.59%)03(1.78%)00
ST-46437900000377(99.4%)002(0.52%)
ST-573611(1.63%)00014(22.9%)3(4.91%)43(70.4%)00
ST-5749900003(3.03%)96(96.9%)000
ST-6581101(0.90%)0000108(98.1%)01(0.90%)0
ST-677780000077(98.7%)01(1.28%)0
None43426(5.99%)5(1.15%)10(2.30%)1(0.23%)65(14.9%)222(51.1%)32(7.37%)25(5.76%)46(10.5%)
Clade1a (ST-828)118929(2.43%)060(5.04%)2(0.16%)204(17.1%)3(0.25%)787(66.1%)51(4.28%)54(4.54%)
Clade1b (ST-1150)2000001(5%)01(5%)018(90%)
Clade1c260000000026(100%)
Clade 2400000000040(100%)
Clade 372000000003(4.16%)