Table 2 Effect of protein sequence quality measured at the protein level. %Identity indicates the average sequence identity observed between the predicted and benchmark protein sequences for the test sets of Confirmed and Unconfirmed proteins
From: A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms
| Â | Confirmed proteins (%Identity) | Unconfirmed proteins (%Identity) |
|---|---|---|
Augustus | 74.44 | 56.22 |
Genscan | 67.13 | 49.86 |
GeneID | 52.26 | 38.52 |
GlimmerHMM | 59.36 | 45.60 |
Snap | 44.20 | 41.70 |