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Table 2 Top 10 known up- and down-regulated differently expressed genes (DEGs) in LRFI group

From: Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis

Gene symbol

Log2FC

P-value

FDRa

Description

HRFI vs LRFI

C24H11orf34

10.09

5.26E-04

0.033

Chromosome 24 C11orf34 homolog

up

FCGBP

5.77

2.85E-05

0.010

Fc fragment of IgG binding protein

up

GUCA2B

5.27

7.40E-04

0.035

Guanylate cyclase activator 2B

up

MUC2

4.43

1.59E-04

0.019

Mucin 2, oligomeric ucus/gel-forming

up

CDHR2

4.03

1.16E-03

0.042

Cadherin related family member 2

up

BFSP1

1.87

2.45E-04

0.024

Beaded filament structural protein 1

up

ND2

1.78

4.23E-05

0.012

NADH dehydrogenase subunit 2

up

CYTB

1.76

1.22E-05

0.007

Cytochrome b

up

ND4

1.68

2.95E-05

0.010

NADH dehydrogenase subunit 4

up

LOC101748207

1.68

7.03E-04

0.034

Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like

up

AICDA

−5.05

1.44E-04

0.018

Activation induced cytidine deaminase

down

LOC107049096

−5.09

1.42E-05

0.007

GTPase IMAP family member 8-like

down

TLX2

−5.25

2.43E-04

0.024

T-cell leukemia homeobox 2

down

LOC112531272

−5.43

1.02E-05

0.006

Osteoclast-associated immunoglobulin-like receptor

down

LOC107050476

−5.83

8.96E-06

0.006

Uncharacterized LOC107050476

down

TMEM150B

−6.27

1.41E-03

0.045

Transmembrane protein 150B

down

LECT2

−6.64

9.11E-04

0.038

Leukocyte cell derived chemotaxin 2

down

LOC429329

−6.88

1.11E-03

0.041

Solute carrier family 30 member 2

down

SLC30A2

−6.88

1.27E-03

0.043

T-cell-interacting, activating receptor on myeloid cells protein 1-like

down

RHNO1

−7.57

1.29E-04

0.017

RAD9-HUS1-RAD1 interacting nuclear orphan 1

down

  1. a FDR false discovery rate