Skip to main content

Table 3 All enriched KEGG pathway-based sets of differentially expressed genes (DEGs) in between RFI groups

From: Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis

Signaling pathwaysCountB-H P-valueGenesa
Phagosome170.0001TLR4, TUBB6, BF2, NCF4, BLB1, CYBB, TLR2B, THBS1, BLB2, ACTB, CTSS, ITGB2, DMB2, TAP1, TAP2, LOC100859737, YF5
Cell adhesion molecules (CAMs)150.0003BF2, BLB1, ICOS, BLB2, CD8BP, ITGA8, ITGB2, PTPRC, NLGN1, DMB2, YF5, ITGA4, VCAM1, PDCD1LG2
Intestinal immune network for IgA production80.0003BLB1, ICOS, AICDA, BLB2, TNFSF13B, DMB2, ITGA4
Cytokine-cytokine receptor interaction180.0003TNFRSF18, FASLG, XCR1, EDA2R, IL18R1, CSF2RA, TNFSF13B, CCL1, CCR2, IL4R, TNFRSF8, IL18, TNFRSF4, IL17RA, IL22RA2, IL1RAP, TNFRSF25, TNFSF4
Oxidative phosphorylation110.0065ND1, ND2, ND3, ND4, ND4L, ND5, CYTB, COX1, COX2, COX3, ATP6
Toll-like receptor signaling pathway90.0140TLR4, TLR2B, SPP1, TRAF3, PIK3CB, STAT1, PIK3R5, PIK3CD, TLR1B
Jak-STAT signaling pathway110.0353CSF2RA, SOCS3, JAK3, PIM1, PIK3CB, STAT1, IL4R, PIK3R5, PIK3CD, IL22RA2, PTPN6
Regulation of actin cytoskeleton130.0412TMSB4X, ARPC5, RAC2, ITGA8, ACTB, PIK3CB, IQGAP2, ITGB2, ARPC1B, PIK3R5, PIK3CD, CYFIP2, ITGA4
  1. a Up-regulated genes in LRFI birds are highlighted in bold and down-regulated genes in normal typeface