Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exons per gene | Average exon length (bp) | Average intron length (bp) | |
---|---|---|---|---|---|---|---|
De novoa | Augustus | 59,267 | 1866.04 | 873.71 | 3.04 | 287.43 | 486.52 |
GlimmerHMM | 195,821 | 4538.43 | 540.7 | 2.16 | 250.76 | 3457.37 | |
SNAP | 115,465 | 3464.46 | 615.94 | 2.8 | 220.02 | 1582.94 | |
Geneid | 122,152 | 2958.40 | 684.27 | 3.08 | 222.01 | 1092.23 | |
Genscan | 92,436 | 5507.46 | 609.14 | 2.96 | 205.68 | 2497.19 | |
Homologb | Zea mays | 40,162 | 1988.08 | 978.69 | 3.32 | 294.72 | 434.93 |
Sorghum bicolor | 73,561 | 2000.94 | 1121.24 | 2.57 | 436.89 | 561.61 | |
Brachypodium distachyon | 67,858 | 2097.32 | 1124.66 | 2.8 | 401.87 | 540.8 | |
Setaria italica | 62,339 | 1568.92 | 826.04 | 2.68 | 308.16 | 442.05 | |
Arabidopsis thaliana. | 43,096 | 1629.35 | 839.3 | 2.77 | 302.45 | 445.1 | |
Oryza sativa | 76,835 | 1550.38 | 915.3 | 2.35 | 389.23 | 469.88 | |
RNA-seq | Cufflinksc | 62,560 | 5041.52 | 1845.64 | 5.54 | 333.32 | 704.38 |
PASA | 63,952 | 2292.77 | 934.6 | 3.9 | 239.86 | 468.9 | |
EVM | 66,649 | 2149.27 | 869.1 | 3.23 | 268.94 | 573.67 | |
PASA-update | 66,482 | 2122.71 | 871.22 | 3.22 | 270.77 | 564.36 | |
Final set c | 39,725 | 2818.49 | 1081.99 | 4.15 | 260.54 | 550.76 |