Table 7 Identification of non-coding RNAs of P. tenuiflora genome. The tRNAs were predicted by tRNAscan-SE software. The rRNA, miRNA and snRNA genes were extracted by INFERNAL software against the Rfam database
Type | Copy | Average length (bp) | Total length (bp) | % of genome | |
|---|---|---|---|---|---|
miRNA | 1376 | 124.89 | 171,853 | 0.015522 | |
tRNA | 692 | 75.27 | 52,086 | 0.004704 | |
rRNA | rRNA | 68 | 207.79 | 14,130 | 0.001276 |
18S | 21 | 406.57 | 8538 | 0.000771 | |
28S | 11 | 129.91 | 1429 | 0.000129 | |
5.8S | 4 | 103.5 | 414 | 0.000037 | |
5S | 32 | 117.16 | 3749 | 0.000339 | |
snRNA | snRNA | 702 | 118.21 | 83,103 | 0.007506 |
CD-box | 449 | 106.31 | 47,734 | 0.004311 | |
HACA-box | 65 | 132.71 | 8626 | 0.000779 | |
splicing | 188 | 141.41 | 26,585 | 0.002401 | |