Skip to main content

Table 1 Classified repeat contents in Peltaster fructicola, Saccharomyces cerevisiae and Zymoseptoria tritici. All annotation data were analysis using the pipeline described in method section

From: A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi

 

P. fructicola

S. cerevisiae

Z. tritici

Genome assembly source

Current study

NCBI R64

NCBI IPO323

Retroelements

97

562

2261

LINEs (long interspersed nuclear elements):

5

4

537

Penelope

0

0

1

Tad1

5

3

376

RTE/Bov-B

0

0

97

L1/CIN4

0

0

63

CRE

0

1

0

LTR (long terminal repeats) elements:

92

558

1376

BEL/Pao

0

0

37

Ty1/Copia

34

477

347

Gypsy/DIRS1

57

81

991

Ngaro

0

0

1

Retroposon (Unclassified)

1

0

348

DNA transposons

15

18

564

hobo-Activator

3

0

85

hAT-hATw

1

0

0

hAT-Ac

2

0

1

hAT-Restless

0

0

84

Helitron

1

1

1

TcMar-Sagan

1

0

1

TcMar-Pogo

1

0

0

TcMar-Fot1

2

1

88

TcMar-Tc1

0

0

40

TcMar-Ant1

0

1

63

Novosib

0

0

30

Dada

0

0

1

En-Spm

1

7

2

DNA (Unclassified)

1

4

44

MuLE-MuDR

0

0

63

Tourist/Harbinger

4

3

61

Other (Mirage, P-element, Transib)

1

1

0

Simple repeats:

1279

2828

6392

Low complexity:

78

530

830

Transposon content (%)

0.05

3.41

10.42

Repeat content (%)

0.34

5.13

12.26