| P. fructicola | S. cerevisiae | Z. tritici |
---|---|---|---|
Genome assembly source | Current study | NCBI R64 | NCBI IPO323 |
Retroelements | 97 | 562 | 2261 |
LINEs (long interspersed nuclear elements): | 5 | 4 | 537 |
Penelope | 0 | 0 | 1 |
Tad1 | 5 | 3 | 376 |
RTE/Bov-B | 0 | 0 | 97 |
L1/CIN4 | 0 | 0 | 63 |
CRE | 0 | 1 | 0 |
LTR (long terminal repeats) elements: | 92 | 558 | 1376 |
BEL/Pao | 0 | 0 | 37 |
Ty1/Copia | 34 | 477 | 347 |
Gypsy/DIRS1 | 57 | 81 | 991 |
Ngaro | 0 | 0 | 1 |
Retroposon (Unclassified) | 1 | 0 | 348 |
DNA transposons | 15 | 18 | 564 |
hobo-Activator | 3 | 0 | 85 |
hAT-hATw | 1 | 0 | 0 |
hAT-Ac | 2 | 0 | 1 |
hAT-Restless | 0 | 0 | 84 |
Helitron | 1 | 1 | 1 |
TcMar-Sagan | 1 | 0 | 1 |
TcMar-Pogo | 1 | 0 | 0 |
TcMar-Fot1 | 2 | 1 | 88 |
TcMar-Tc1 | 0 | 0 | 40 |
TcMar-Ant1 | 0 | 1 | 63 |
Novosib | 0 | 0 | 30 |
Dada | 0 | 0 | 1 |
En-Spm | 1 | 7 | 2 |
DNA (Unclassified) | 1 | 4 | 44 |
MuLE-MuDR | 0 | 0 | 63 |
Tourist/Harbinger | 4 | 3 | 61 |
Other (Mirage, P-element, Transib) | 1 | 1 | 0 |
Simple repeats: | 1279 | 2828 | 6392 |
Low complexity: | 78 | 530 | 830 |
Transposon content (%) | 0.05 | 3.41 | 10.42 |
Repeat content (%) | 0.34 | 5.13 | 12.26 |