Table 3 The significant single nucleotide polymorphisms (SNPs) and their candidate genes associated with FER resistance identified in this study
SNP | Chromosome | Pos | P | R2 | location | Candidate Gene | Annotation |
|---|---|---|---|---|---|---|---|
S1_9,398,408 | 1 | 9,398,408 | 5.72E-05 | 0.057312 | intragenic | GRMZM2G107686 | Xylem serine proteinase 1 |
S1_11,487,039 | 1 | 11,487,039 | 2.93E-05 | 0.070112 | intragenic | GRMZM2G086072 | Transcription factor-like protein DPB |
S1_232,529,882 | 1 | 232,529,882 | 8.36E-05 | 0.060307 | intragenic | GRMZM2G150179 | Putative disease resistance RPP13-like protein 1 |
S3_1,591,322 | 3 | 1,591,322 | 8.16E-05 | 0.056117 | promoter | GRMZM2G449160 | Glutaredoxin domain-containing cysteine-rich protein 1 |
S4_153,270,141 | 4 | 153,270,141 | 6.37E-05 | 0.058369 | intragenic | GRMZM2G463471 | Actin-depolymerizing factor |
S4_153,270,174 | 4 | 153,270,174 | 4.05E-05 | 0.061957 | |||
S4_178,501,587 | 4 | 178,501,587 | 9.53E-05 | 0.056872 | promoter | GRMZM2G356046 | Putative mannan endo-1,4-beta-mannosidase 9 |
S4_187,594,182 | 4 | 187,594,182 | 6.24E-05 | 0.070366 | intragenic | GRMZM2G059381 | chain acyl-CoA synthetase 7, peroxisomal |
S4_202,889,727 | 4 | 202,889,727 | 1.86E-05 | 0.068033 | – | – | – |
S4_205,928,061 | 4 | 205,928,061 | 4.64E-05 | 0.062262 | – | – | – |
S5_6,358,869 | 5 | 6,358,869 | 3.27E-05 | 0.063575 | promoter | GRMZM2G176042 | Protein FAM135A |
S5_16,324,316 | 5 | 16,324,316 | 9.26E-05 | 0.061203 | intragenic | GRMZM2G134980 | protein DnaJ |
S5_16,324,318 | 5 | 16,324,318 | 9.26E-05 | 0.061203 | |||
S7_129,966,178 | 7 | 129,966,178 | 8.89E-05 | 0.056173 | promoter | GRMZM5G818643 | Transcription factor bHLH49 |
S7_129,966,180 | 7 | 129,966,180 | 8.89E-05 | 0.056173 | |||
S7_129,966,182 | 7 | 129,966,182 | 8.89E-05 | 0.056173 | |||
S7_129,966,183 | 7 | 129,966,183 | 8.89E-05 | 0.056173 | |||
S7_153,838,246 | 7 | 153,838,246 | 3.38E-06 | 0.101554 | promoter | GRMZM2G488098 | Unknown |