Table 2 Number of significantly differentially expressed genes (DEGs) from the pairwise comparisons, at FDR < 0.05, and additional criteria logCPM> 1.5 and logFC> 1
From: Transcriptome profiling of human thymic CD4+ and CD8+ T cells compared to primary peripheral T cells
group | comparison | upregulated in | #DEGs | #DEGs total |
|---|---|---|---|---|
CD4+ | thymus vs infant blood | thymus | 1624 | 2957 |
infant blood | 1333 | |||
CD4+ | thymus vs adult blood | thymus | 1451 | 2688 |
adult blood | 1237 | |||
CD4+ | infant blood vs adult blood | infant blood | 246 | 575 |
adult blood | 329 | |||
CD8+ | thymus vs infant blood | thymus | 1286 | 2695 |
infant blood | 1409 | |||
CD8+ | thymus vs adult blood | thymus | 1154 | 2222 |
adult blood | 1068 | |||
CD8+ | infant blood vs adult blood | infant blood | 250 | 405 |
adult blood | 155 | |||
adult blood | CD4+ vs CD8+ | CD4+ | 339 | 675 |
CD8+ | 336 | |||
infant blood | CD4+ vs CD8+ | CD4+ | 819 | 1995 |
CD8+ | 1176 | |||
thymus | CD4+ vs CD8+ | CD4+ | 1107 | 2028 |
CD8+ | 921 |