Phylogenomic incongruence in Ceratocystis: a clue to speciation?

BMC Genomics

Table 1 General information and assembly statistics of the 17 Ceratocystidaceae isolates used in this study

Species	Isolate number/Strain	Code^a	Country	Host (Genus)	Genome accession number	Size (Mb)	N50	Contigs^b (> 1 kb)
C. albifundus	CMW17620	CALB1	South Africa	Terminalia	JSSU00000000	27.15	58,335	939
	CMW4068	CALB2	South Africa	Acacia	MAOA02000000	27.32	50,568	1003
	CMW17274	CALB4	South Africa	Faurea	MANX00000000	26.56	22,532	2122
	CMW24685	CALB5	Kenya	Acacia	MANZ00000000	27.12	48,054	1072
	CMW24860	CALB6	Tanzania	Acacia	JAAUVK000000000	27.42	62,926	1064
C. eucalypticola	CMW9998	CEUC	South Africa	Eucalyptus	LJOA00000000	31.26	116,489	961
C. fimbriata	CMW15049	CFIM1	USA	Ipomoea	JAAVJK000000000	29.5	13,763	3545
C. fimbriata	CMW14799	CFIM2	USA	Ipomoea	APWK00000000	29.5	174,236	399*
C. harringtonii	CMW14789	CHAR	Poland	Populus	MKGM00000000	31.06	66,000	813*
C. manginecans	CMW17570	CMAN1	Oman	Prosopis	JJRZ00000000	31.71	77,070	980*
	CMW22563	CMAN2	Indonesia	Acacia	VIFZ00000000	31.87	606,428	231*
	CMW46461	CMAN3	Malaysia	Acacia	SGIO00000000	31.8	598,724	225*
C. platani	CFO	CPLA	Italy	Platanus	LBBL00000000	29.18	77,580	1213
C. smalleyi	CMW14800	CSMA	USA	Carya	NETT00000000	27.3	–	1242
D. virescens	CMW17339	DVIR	USA	Acer	LJZU00000000	33.65	118,189	561
E. polonica	CMW20930	EPOL	Norway	Picea	LXKZ00000000	32.46	86,326	914*
E. laricicola	CMW20928	ELAR	Scotland	Larix	LXGT00000000	32.79	77,789	879*

^aSpecies code used in this study for identification of each isolate. The first letter represents the genus, while the following three letters correspond to species name. Numbers at the end of codes represent different isolates of the same species
^bNumber of contigs greater than 500 bp

ISSN: 1471-2164